Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0937 ATGCAGAGATGCTGCGGGACAACAATTTGCAGGGAGGGGGCTAGGGCTTTTCCTCTCGGAGCGGCGCAGAAGGAAACTACAGCATATGTGAAACGTCTCAAGGTTATAGACTACCATAAACTTGGTCAATACTCGTTTTTCTTTCTGGGTCTTTTGGTTTACCTTCGCGAACATGAAGAAGATAGGGCAGATGAGAATATTCGGTTTCTTCGTCCTATTGTGGATTGCAATGAGTGTGCACCTGTTCCTGCTTGCCGCTTTGGCAAGAGAGTCTTAAGTGATGAGATAGACTGCTCAAACTTGGCATCTTGTCCTCCTCCAGTCACGCTGCACCAAGAAAACCGTCACCAGGTGGTGATAGATAATGGCATAGTTGGCGTCTCATTGTCACGACCAGAGGGCGATGTCCTTGGAATATCATACAATGGAATAGATAATGTGCTTGAAGCTCGTAACCATCGAGATGATAGAGGATATTTCGACGTTGTTTGGAACGAACCAGCAGGAAGCCATAATAACTATGTGAGAATCCGAGGGACAAAGTTTTCCGTTATAATGGCAAACGAAGATCAAGTCGAAGTTTCTTTTTCAACTACATGGGATTCTTCGGTGCCGGACGCAAATGTCCCAATGAATATAGATAAAAGGTATATTTTGCGTAGAGGTAGCTCAGGATTGTATTCATATTTCATATTTGAGCGTTTAGAAGGTTTTCCGGCAATGGAGATGGATGTAGTCAGGACTGTTTACAAGCTCCACAGAGACATGTTCCATTACATGGCTATATCAGACGATAGGCAGAGAAACATGCCAAGTGCGGAAGATAGAATTAGTGGCCAACGCCTTGGTTATGATGAAGCTGTTCTCTTAACCCAACCAAGTAACCCAGAATTCCTAGGAGAGGTGGATGATAAATACCAGTACTCGTGTGAGAACAAAGACAACAATTCATTTGTTAGCCCCCACTATGCTGGGAAGGAGGTAACCATGGCATTTCAACAAGGGGAGATTTATAAGAAGGTTTTTGGCCCTGTTTTTGTCTATCTCAACTCTGCGTCAAGCCAGGATAATTCCCAGACACTCTGGAAAGATGCCGTGCAGCAGATGTCAAAGGAAGTCAAAAGCTGGCCATATGATTTCCCTCGATCCCAAGATTTCCTTCCACCCAATCAACGGGGAACAGTAGCTGGACGATTACTGGTCCAAGACCGGTACATTAAAGGAGGTAGATTCATTTTTGCTAATAAAGGTTACGTTGGTCTGGCTGTTCCTGGAGATGCGGGATCATGGCAAAAAGAAAGCAAGGGTTATCAATTCTGGACGCAAGCTGATGGGAGAGGCTACTTCACAATACAAAATGTTGTACCAGGCGACTACAACTTGTACGCATGGGTTCCTGGCGTTCTTGGTGATTACAGATACAACTTTAAAATTACTATCACAGCAGGACAAGTCATCCAATTGAGTTCACTAATTTATACGCCTCCAAGAAATGGTCCTACCATTTGGGAGATTGGCATCCCTGATCGCTCAGCCGCTGAGTTCTATGTCCCAGACCCTTATCCTACCCTCATGAACCGGTTGTACGATGGAAAACCAAAAGACAAGTTTAGGCAATACGGGTTGTGGCAACGCTACTCTGACTTATATCCAACGGATGACCTCGTTTACACTGTTGGTGTGGATGATTATAGACAAGATTGGTTCTATGCTCAGGTTACCAGGAACTTAGGAAATGACAGATACAGTCCAACGACATGGCAGATAGCATTTGAACTCCCATTTGTTATAAGAGGAAATTACACGCTACAACTTGCCTTGGCATCAGCCAGCACTTCTCGGTTGGGGGTTCGGTTCAATGATCCTTTAGCACATCCTCCACACTTCGATACGGGAGTAATAGGGCAGGACAACGCCATAGCAAGGCATGGCATCCATGGATTGTATTGGAGGGCAACCGGAGATCACGATGTGAGGTTTAAGGTGTTATATTGTGGAATTTGCCACTCAGACCTTCACTCTATGAACAACGACTGTCCATCTACCCTATGGTTCCTGGGTATCACCATGATCATCCACCTAATTCATTGA 2091 0.4481 MQRCCGTTICREGARAFPLGAAQKETTAYVKRLKVIDYHKLGQYSFFFLGLLVYLREHEEDRADENIRFLRPIVDCNECAPVPACRFGKRVLSDEIDCSNLASCPPPVTLHQENRHQVVIDNGIVGVSLSRPEGDVLGISYNGIDNVLEARNHRDDRGYFDVVWNEPAGSHNNYVRIRGTKFSVIMANEDQVEVSFSTTWDSSVPDANVPMNIDKRYILRRGSSGLYSYFIFERLEGFPAMEMDVVRTVYKLHRDMFHYMAISDDRQRNMPSAEDRISGQRLGYDEAVLLTQPSNPEFLGEVDDKYQYSCENKDNNSFVSPHYAGKEVTMAFQQGEIYKKVFGPVFVYLNSASSQDNSQTLWKDAVQQMSKEVKSWPYDFPRSQDFLPPNQRGTVAGRLLVQDRYIKGGRFIFANKGYVGLAVPGDAGSWQKESKGYQFWTQADGRGYFTIQNVVPGDYNLYAWVPGVLGDYRYNFKITITAGQVIQLSSLIYTPPRNGPTIWEIGIPDRSAAEFYVPDPYPTLMNRLYDGKPKDKFRQYGLWQRYSDLYPTDDLVYTVGVDDYRQDWFYAQVTRNLGNDRYSPTTWQIAFELPFVIRGNYTLQLALASASTSRLGVRFNDPLAHPPHFDTGVIGQDNAIARHGIHGLYWRATGDHDVRFKVLYCGICHSDLHSMNNDCPSTLWFLGITMIIHLIH 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0937 696 Gene3D - 387 490 - -
Glsi09g0937 696 CDD RGL4_C 503 650 - -
Glsi09g0937 696 SUPERFAMILY GroES-like 650 682 IPR011032 -
Glsi09g0937 696 Pfam Rhamnogalacturonate lyase family 99 302 IPR010325 -
Glsi09g0937 696 Gene3D - 498 651 - -
Glsi09g0937 696 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 317 652 - -
Glsi09g0937 696 FunFam Rhamnogalacturonate lyase B 388 488 - -
Glsi09g0937 696 SUPERFAMILY Galactose-binding domain-like 498 655 IPR008979 -
Glsi09g0937 696 CDD RGL4_N 117 358 - -
Glsi09g0937 696 CDD RGL4_M 391 491 IPR029413 -
Glsi09g0937 696 Gene3D - 652 682 - -
Glsi09g0937 696 SUPERFAMILY Starch-binding domain-like 387 489 IPR013784 GO:0030246
Glsi09g0937 696 Pfam Polysaccharide lyase family 4, domain III 501 652 IPR029411 -
Glsi09g0937 696 Pfam Polysaccharide lyase family 4, domain II 417 487 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0937 Glsi-ChrGlsi09 6499886 6509073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0937 108 650 Polysaccharide Lyase AT1G09890 52.203 0.0 594