Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0936 ATGACCGGTGCAAAAGGGTATCACGGGGTGCAACTTTTGGTTGGTTCATATGTGGAGAAGATGAAGAAGATAGGTGACATAAGGAAACGGGGTTTCTTGCTGTGGTGGTTTGGAATGACTCTGCAGCTCTGCTTCTTGCTGGGTGGTTGTTCTGAGAAGACCTCAGATAAAAGCAAATGTTTTGTATATGAGGTTATCATTAGCTGCGATTTTCAGGTGATTATTGACAATGGCATCGTCGAAGTCAGTTTGTCGAAGCCCGAGGGCTATGTTCTTGGAATATCATATAATGGAATCGACAATGTACTAGAACCTCGTCAGGAAGAACAAGACAGAGGGTATTTCGATGTTGTTTGGAATGAACCAGGAAAACCTAGTACCTTCCAGAGAATCCATGGGAACGAGAATTTTACAATTCTAGCAGCGGACGAGAACCAAGTGGAAATTTCATTTATGAGAACATGGACGTCTTCCATGAAAGGCACAGATGTTCCCATAAACATAGACCAAAGGTATATATTGCGAAGAGGCGACTCTGGATTTTATACATACACAATATTCGAGCGCCCCGTAGGATTGCCAGCAGTGGAGGTTGATCAAATTAGGAATGTTTTCAAGCTCCGGGAAGACAAGTTCCATTATATGGCTATATCAGACAGCAGGCAAAGATACATGCCAAGCAGGGAAGATAGAAATAGTGGGGAAATCCTAGCTTATCCTGAAGCTGTTCTGATAACCAAGCCACTTAACCTAGAATTTAGAGGAGAGGTGGATGACAAATACCAGTACTCTTGTGAGAATAAAGACAACACAGTGCATGGGTGGATTAGCTATGACGCTGATGCAAACGTGGGCTTCTGGATAATAACACCCAGTAATGAGTTCCGCAATGCTGGGCCCACCAAGCAAGACCTCACCTCTCACGTGGGCCCCTACTCTCTTTCTATGCTTGTTAGCACCCACTATGCTGGGAAGGAGGTAACCATGGCATTTGAAGAAGAGGAGCCTTATAAGAAGGTTTTTGGCCCTGTTTTTGTCTATCTCAACTCTGCTTCGAGCCAGGATGATTCACAAACGCTCTGGACAGATGCTGTGCAACGGATGTCCAAGGAAACCAAAAGCTGGCCTTATGCTTTCCCTCAATCTGAAGATTTCATTCGATCCGATCAACGTGGAACCTTGGCTGGACGACTACTAGTTCAAGACCGGTATATCATGGGAGGGAGATTTCTATATGCTGACTCTGCTTATGTTGGTCTTGCTCTTCCTGGAGCTGCGGGATCATGGCAAAAAGAAAGCAAGGGTTATCAATTCTGGACCCAAGCTGACAAGAAAGGCTATTTCGTAATAAAAAATGTTGTGCCAGGGAACTATAACTTGTTTGCATGGGTTCCTGGCTTTATTGGTGATTACAGATATAATGCTACAATCACCATCACACCAGGATCTCTCATCCAATTGGATTCAATTGTATACAGTCCTCCAAGAAATGGTTCCACCCTTTGGGAAATTGGCATCCCAGATCGCTCAGCTTCAGAATTCTATGTACCAGACCCTTACCCTACACTCATGAACAAACTATACAATGAAAATCCCGAAGACAAGTTTAGGCAATATGGGTTGTGGGAACGTTATGCTGATTTATATCCAAATAATGATCTAGTTTACACTGTGGGTGTTGATGAGTATGATAAAGACTGGTTCTATGCTCAGGTTACCAGGAGCACAGGAAATAGGACATACGAACCAACGACATGGCAGATTATATTTGAACTTCAAAATGACACACTGAAAGGAAATTACACACTACAACTGGCCTTGGCATCAGCCGCTGATTGTGACTTGCAGATTTGGTTCAATGAGATGGGTGATTCTCCTCCCCATTTTTCAACCGGACCAATAGGCAAAGACAATGCCATAGCAAGGCATGGGATTCATGGATTATATTGGCTGTCCAGCATTGCAGTTCCAAGCGATCGTTTAGTTAAAGGGAAGAATACCATCTATCTAAGGCAGGCTAGGGCTATAAATCCTTTCCAAGGAGTTATGTATGATTATATACGTTTAGAAAGACCTCCAAGTCCAAGGACTTGA 2094 0.4341 MTGAKGYHGVQLLVGSYVEKMKKIGDIRKRGFLLWWFGMTLQLCFLLGGCSEKTSDKSKCFVYEVIISCDFQVIIDNGIVEVSLSKPEGYVLGISYNGIDNVLEPRQEEQDRGYFDVVWNEPGKPSTFQRIHGNENFTILAADENQVEISFMRTWTSSMKGTDVPINIDQRYILRRGDSGFYTYTIFERPVGLPAVEVDQIRNVFKLREDKFHYMAISDSRQRYMPSREDRNSGEILAYPEAVLITKPLNLEFRGEVDDKYQYSCENKDNTVHGWISYDADANVGFWIITPSNEFRNAGPTKQDLTSHVGPYSLSMLVSTHYAGKEVTMAFEEEEPYKKVFGPVFVYLNSASSQDDSQTLWTDAVQRMSKETKSWPYAFPQSEDFIRSDQRGTLAGRLLVQDRYIMGGRFLYADSAYVGLALPGAAGSWQKESKGYQFWTQADKKGYFVIKNVVPGNYNLFAWVPGFIGDYRYNATITITPGSLIQLDSIVYSPPRNGSTLWEIGIPDRSASEFYVPDPYPTLMNKLYNENPEDKFRQYGLWERYADLYPNNDLVYTVGVDEYDKDWFYAQVTRSTGNRTYEPTTWQIIFELQNDTLKGNYTLQLALASAADCDLQIWFNEMGDSPPHFSTGPIGKDNAIARHGIHGLYWLSSIAVPSDRLVKGKNTIYLRQARAINPFQGVMYDYIRLERPPSPRT 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0936 697 CDD RGL4_C 502 690 - -
Glsi09g0936 697 Gene3D - 497 690 - -
Glsi09g0936 697 SUPERFAMILY Galactose mutarotase-like 74 355 IPR011013 GO:0003824|GO:0005975|GO:0030246
Glsi09g0936 697 FunFam Rhamnogalacturonate lyase B 387 487 - -
Glsi09g0936 697 Pfam Polysaccharide lyase family 4, domain II 414 486 IPR029413 -
Glsi09g0936 697 SUPERFAMILY Starch-binding domain-like 388 490 IPR013784 GO:0030246
Glsi09g0936 697 Gene3D - 66 369 IPR014718 GO:0030246
Glsi09g0936 697 Pfam Rhamnogalacturonate lyase family 69 257 IPR010325 -
Glsi09g0936 697 SUPERFAMILY Galactose-binding domain-like 497 690 IPR008979 -
Glsi09g0936 697 CDD RGL4_N 70 357 - -
Glsi09g0936 697 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 64 693 - -
Glsi09g0936 697 Pfam Polysaccharide lyase family 4, domain III 500 689 IPR029411 -
Glsi09g0936 697 CDD RGL4_M 390 487 IPR029413 -
Glsi09g0936 697 Gene3D - 387 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0936 Glsi-ChrGlsi09 6493397 6499531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0936 72 692 Polysaccharide Lyase AT1G09890 56.731 0.0 737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0981 05 59874947 59879619 Glsi09g0936 09 6493397 6499531 CCT