Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0929 ATGGGAAGAGGGAAGATTGTGATCCAAAGGATCGACAATTCTGCAAGCAGACAAGTAACCTTCTCAAAGAGGAGAAAGGGGTTGCTTAAGAAAGCAAAAGAGCTAGCAATTCTGTGTGATGTAGAGATTGGGCTTGTGATATTCTCTAGCACAGGAAGGCTTTATGAATATGCCAGTACCAGCATGAAATCAGTGATTGAGAGATATAACACATGCAAGGAGGAACATCAACAAGTGATGAATCCGGAATCAGAGGTCAAGTTCTGGCAAAGGGATGCAGAGATGTTAAGGCAGCAACTACAAAATCTACAAGAAAACCATCGGTACAATCCTTTCTATTTATTTAATTAG 351 0.4046 MGRGKIVIQRIDNSASRQVTFSKRRKGLLKKAKELAILCDVEIGLVIFSSTGRLYEYASTSMKSVIERYNTCKEEHQQVMNPESEVKFWQRDAEMLRQQLQNLQENHRYNPFYLFN 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0929 116 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi09g0929 116 Gene3D - 13 110 IPR036879 GO:0003677|GO:0046983
Glsi09g0929 116 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 107 - -
Glsi09g0929 116 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi09g0929 116 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi09g0929 116 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Glsi09g0929 116 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi09g0929 116 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi09g0929 116 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi09g0929 116 Coils Coil 86 106 - -
Glsi09g0929 116 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Glsi09g0929 116 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Glsi09g0929 116 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0929 Glsi-ChrGlsi09 6447468 6458974 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0929 1 108 MADS-box Gene Family AT4G37940 77.778 3.26e-60 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi09g0929 SRF-TF 8.9e-25 No_clan