Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0922 ATGGAGCTTACTCAACTTGGTTTTCTGGAGGAATTACTTGCTCCAAGGAGAGATACTTGGAGTACTTTCTCCACTGGCTTGAGCGAGTTACTCCCTAGTGGTTGGAGCTTTGATTCTTTTGATGATTACCCAGCTTTAGCCTCCTTAAATCCACCATTTGCTGCATTGCCAACACCAATAGACCATAGATTTGAATGTCCCTACTCTAGTCAAGCAGCATACCCATTTGTTGATGGGTTCACGGTGCCTGAGCTTGATTCATCCTACTCATACTCCAGGAATGAAGACTCGGCACCACTTCAAGCACAGGAAGAGAACCCATCAATGGAGGATGAAGAGCTTGGCTTTCTGAGCATTGAAGATCAGAGTACGGAAGAAAGAAATAATAGCTGCAAAATTGAAGAACAAGCTACAGAAGCTCCAGTCTTCAACATGGGTTTGTGTGGAGAGAAAAAACCTAAATCCAAGAAGCTAGAAGGGCAACCCTCAAAGAATCTCATGGCAGAAAGAAGGCGAAGAAAGCGCTTGAATGACCGCCTATCTATGCTAAGGTCAATAGTCCCTAAGATCAGCAAGATGGACAGGACCTCTATTCTTGGAGATACCATAGATTACATGAAAGAGCTTCTGGAAAGGATAGGTAAGTTGCAAGAAGAAATGGAGGAGGGTGGAAATCAGATAAACCTCTTGGGCATTTCCAAGGAGCTAAAGCCAAATGAAGTAGTGGTGAGAAATTCCCCCAAGTTCGATGTTGAGAGGAGAGACGACGACGCGAGAATCAATATCTGCTGTGCCACCAAGCCTGGATTGTTACTGTCAACAGTGAACACCCTAGAAGCATTAGGCCTTGAGATTCAGCAATGTGTTATAAGTAGCTTTAACGATTTTTCAATGCAAGCATCTTGCTCGGAGGTAGCTGAGCAGAGAACTTGTACAAGCTCCGAAGAGATTAAGCAGGCACTATTCAGAAATGCAGGTTATGGAGGGAGATGCCTCTAGGGAAGTGAAATACAGGATTCTAAACATCAGCCTACTATACACGCATTTATAAGCAAGTATTGCTCAATCAGCTCCAATACTGTCATGGTTGTCCTCATCAGAACTACAAGTTATGCCGTGAAATTGGCTTGCAAATGTCGAAATCGGGGGACTAACAAGACCTGTAAATGTGTAATGCACGAGCTACTAAACCTTCAAAGGGACTTCTTGTGGCTCGAAGAGGTTGTCTTTAGCTGCTTTGGAGTAGAAAGCGCTTGGCTGAACATCTGTATTCTTCTGGTGGTGGAGAACTCTTGTGGACCTTCGGGGGGTCGTAGTCGTGGATTGGTTACTGGTTAG 1338 0.4439 MELTQLGFLEELLAPRRDTWSTFSTGLSELLPSGWSFDSFDDYPALASLNPPFAALPTPIDHRFECPYSSQAAYPFVDGFTVPELDSSYSYSRNEDSAPLQAQEENPSMEDEELGFLSIEDQSTEERNNSCKIEEQATEAPVFNMGLCGEKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEMEEGGNQINLLGISKELKPNEVVVRNSPKFDVERRDDDARINICCATKPGLLLSTVNTLEALGLEIQQCVISSFNDFSMQASCSEVAEQRTCTSSEEIKQALFRNAGYGGRCLXGSEIQDSKHQPTIHAFISKYCSISSNTVMVVLIRTTSYAVKLACKCRNRGTNKTCKCVMHELLNLQRDFLWLEEVVFSCFGVESAWLNICILLVVENSCGPSGGRSRGLVTG 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0922 445 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Glsi09g0922 445 Pfam Helix-loop-helix DNA-binding domain 166 209 IPR011598 GO:0046983
Glsi09g0922 445 Coils Coil 206 226 - -
Glsi09g0922 445 Gene3D - 152 225 IPR036638 GO:0046983
Glsi09g0922 445 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 98 326 - -
Glsi09g0922 445 SMART finulus 166 215 IPR011598 GO:0046983
Glsi09g0922 445 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 230 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0922 Glsi-ChrGlsi09 6387604 6390463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0922 96 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 58.506 4.78e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi09g0922 HLH 1.1e-09 No_clan