Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0920 ATGATGGAAAAAGTAAGTGGAATGAGTGATGATAGGAGGTTACTTGTCCCGCTCACCACCCGGCAAACCCACTTCTCGTGCCGCTTTCTTGTCCCCCCAATTCCCTGTTTTCCTCTGTCCCCTCTATTCAATTCTCTCATACCCACTCCACTTCTCTATCTTTCCTCTTTTCTCTCTCCTCTCTCTTCCTCTGAACTGTTGCTGCATTTCCCATCTTACCCCCATGCTTCCGACTGTCAAAATATGGTGGTGTCCAATGTAATGGACTCGAGAATAATCGGTCTTCTTCTCTGTCTGATCTACCAAAGCTTCGTTAGTTCGTATACTTGGAGTCTGATGTCTCCGCCAGTGCTCGTTGCTGAGGAGGAAGGGCAGAGCAACGCCTCAACAGTGACATCTTCACCGTCCTTTGGTTGTATCTCCCAGAATGCGACTGGATTAAAAGAACGCAATTACCTGGGGTTGTCAGATTGCTCGTCAGTAGAGAGTTCTACTCTTCCAAGCTTATCAGATGAGAAAAAGGACAATCTGAATTTGAAGGCTACAGAGTTGAGGTTGGGTCTGCCTGGATCACAATCGCCAGAAAGGGATCCAGATACTTACTTACTGAGCTCAACAAAACTTGATGAGAAGCCACTCTTTCCTTTGATTCCTACAAAAGATGGTATCTGCTCATCATCCCAGAAACATGTGATTTCAGGCAATAAAAGAGGTTTCTCTGACACCGTGGACGTGTTCCCTGAGGCGAGCTTTCCTGGTAATTCAGGGATAAACGTATTGCTGTCACCTAGACCTTCTGGAGCTCAGCCAACTGTAATGAAAGAAATGCCGACTAAGGTGTTACAAGAACGACCTAGTGCAGCTAATGGGACTGGTCAAAACCATACAGGTGCTTCTATCAGTGCCAGTGCACCAGTTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCATCTAGGAAGCACAGGCACTCATTGGCCACCGCTTCAAAGAACACTGACGAAGTAGACGGAAAACCAGGTCCTGCTGCTCTCTTTGTGAAGGTAAGCATGGATGGTGCTCCCTATCTAAGGAAGGTTGATCTAAGAAGTTATACAACATACCAGGAACTCTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACACTAGGTCAGTGTGGTTCCCATGGAGCTCCTGGAAGAGAAATGTTGAGTGAGAGCAAGTTAAGGGACCTTCTGCATGGTTCAGAATATGTACTCACTTATGAAGATAAAGATGGTGATTGGATGCTTGTAGGGGATGTACCATGGGAGATGTTTATTGACACATGCAAGAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCCATGGAGAAATCCAAGAGCAGGAGCTAG 1398 0.4635 MMEKVSGMSDDRRLLVPLTTRQTHFSCRFLVPPIPCFPLSPLFNSLIPTPLLYLSSFLSPLSSSELLLHFPSYPHASDCQNMVVSNVMDSRIIGLLLCLIYQSFVSSYTWSLMSPPVLVAEEEGQSNASTVTSSPSFGCISQNATGLKERNYLGLSDCSSVESSTLPSLSDEKKDNLNLKATELRLGLPGSQSPERDPDTYLLSSTKLDEKPLFPLIPTKDGICSSSQKHVISGNKRGFSDTVDVFPEASFPGNSGINVLLSPRPSGAQPTVMKEMPTKVLQERPSAANGTGQNHTGASISASAPVSKAQVVGWPPIRSSRKHRHSLATASKNTDEVDGKPGPAALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0920 465 SUPERFAMILY CAD & PB1 domains 343 446 - -
Glsi09g0920 465 MobiDBLite consensus disorder prediction 283 338 - -
Glsi09g0920 465 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 177 452 IPR003311 GO:0005634|GO:0006355
Glsi09g0920 465 ProSiteProfiles PB1 domain profile. 345 449 IPR000270 GO:0005515
Glsi09g0920 465 FunFam Auxin-responsive protein 340 457 - -
Glsi09g0920 465 Pfam AUX/IAA family 182 456 IPR033389 -
Glsi09g0920 465 Gene3D - 342 458 - -
Glsi09g0920 465 MobiDBLite consensus disorder prediction 284 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0920 Glsi-ChrGlsi09 6373014 6378623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0920 349 455 B3 DNA Binding Superfamily AT4G23980 29.907 7.08e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi09g0920 AUX_IAA 3.7e-86 CL0072