Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0911 ATGACAGACTATCGCTTGCCGCCGACTATGAATCTCTGGACCGATGACAATTCCTCCGTCATGGACGCGTTCATGAGCTCCGATCTATCTACCCTGTGGCCTCCTCCGCCTCAACCGCAATCCTCTGCTTCCACCACCACCACTACGGGACCTGACCCCACCAAAGCTCTTTCTCAATCTCAGCCGCCACTCTGTCTCTTCAATCAGGAAACTCTCCAGCAACGCCTCCAGGCGCTGATTGAGGGTGCCAGGGACAGCTGGACCTACGCTATCTTCTGGCAATACTCCTGTGACTGCTCGGGGGTCTCCGTGTTGGGTTGGGGCGATGGGTACTATAAAGGCGAGGAAGATAAAGGAAAAGGGAAGGCCAAGACGTCGACGTCCGCGGTCGAGCAGGATCACCGTAAGAAGGTTCTTCGCGAGCTGAATTCGCTCATCTCTGGGTCATCTACCATCACGGACGACGCCGTGGACGAAGAAGTAACCGATACCGAGTGGTTCTTTTTGGTTTCAATGACTCAGTCGTTTTTCAACGGTGGTGGATTACCGGGACAGGCGTTCTTCAATTCGAGCCCCGTCTGGATCACTGGTGCGGACCGTTTATTGGTTTCGACGTGCGAGAGGGCGAGGCAGGGGCAGGTGTTCGGACTTCAGACCTTGGTTTGCATACCATCAGCGAGTGGGGTAGTCGAGTTGGGCTCCACTGAGCTGATTTTCCAAAACGCCGACCTGATGAATAAGGTCAGAGTTTTGTTCAATTTCAACAGCCCTGAAGTCGGTTCGTGGCCCTTGACTCCTAGTACCAATCAAGGTGAGAATGACCCTTCGTCGCTCTGGCTCAATGATCCTTGTAGTGGTATTGAAATCAGGGATTCGGTGACTACTGTTCCGCCTACTTCAGTTCCCAGCTCTACTAATAGCCATAATAATCAGACAATTGCCAAGCCGATGCAGTTCGATACCCCAGGTTCCAGTACTTTAACCGAAGCCCCAAGTGCCATTCATATCCCAAACGCTCACCATGGTCACCAGCAACGGCAATCGCTGAACCAGGGTTTGTTTTCAAAAGAATTGAACTTTTCGGAATGCGGATACGACGCAAATGACGGGAAGAACGGTAACTCGCATTTTTTGAAGCCGGAATCGGGTGAGATTTTGAATTTCAGGGAGAGCAGGATTAACTCTTATGGTGGGAATGGGAATTTATTCTCAGGTCAGTCTCAATTCGCTGCTGAGGAGAACAAGAAGAGGAGGTCGCCTACGTCCAGGGGTAGCAATGACGAAGGGATGCTTTCCTTCACTTCGGGTGTGATTCTGCCCGCTTCAAATATAAAGTCAAGCGGTGGCGGCGATTCTGATCATTCGGATCTTGAAGCTTCTGTGGTGAAGGAGGTAGATAGTAGCAGGGTAGTAGAACCAGAGAAAAAACCTCGGAAGAGAGGACGGAAGCCAGCAAATGGTAGAGAGGAGCCTCTGAATCACGTTGAAGCGGAAAGGCAGAGGAGAGAGAAGCTCAATCAAAGGTTCTATTCGCTTCGTGCGGTGGTTCCAAATGTATCAAAGATGGACAAAGCATCCCTTCTGGGTGATGCGATATCTTACATTACTGAACTCAAGTCGAAGCTTCAGAGTCTAGAATCAGATAAGGAGGAATTGCAGAACCAATTGGATTCTGTTACGAAGGAACTTGAGCTGGCCACTAAAGATTCGCGTTATCCAGGTTCAGGGGCACCTCCATCGGAAAGAGAACCAAATCACGCCAGTCACCATAGTAGCAAGCTAATTGATTTAGATATCGACGTGAAGATTATTGGTTGGGATGCGATGATTCGGATCCAATGCAACAAGAAGAACCACCCAGCAGCAAGGTTGATGGCAGCTTTTATGGAGCTAGACCTGGATGTGCACCACGCAAGTGTGTCGGTGGTGAATGATTTGATGATCCAACAGGCAACAGTGAAGATGGGGAGTCGATTTTACACGCAGGAGCAGCTCCGGTTAGCATTATCGTCCAAAGTTGGCGATGTCCGATAG 2034 0.5015 MTDYRLPPTMNLWTDDNSSVMDAFMSSDLSTLWPPPPQPQSSASTTTTTGPDPTKALSQSQPPLCLFNQETLQQRLQALIEGARDSWTYAIFWQYSCDCSGVSVLGWGDGYYKGEEDKGKGKAKTSTSAVEQDHRKKVLRELNSLISGSSTITDDAVDEEVTDTEWFFLVSMTQSFFNGGGLPGQAFFNSSPVWITGADRLLVSTCERARQGQVFGLQTLVCIPSASGVVELGSTELIFQNADLMNKVRVLFNFNSPEVGSWPLTPSTNQGENDPSSLWLNDPCSGIEIRDSVTTVPPTSVPSSTNSHNNQTIAKPMQFDTPGSSTLTEAPSAIHIPNAHHGHQQRQSLNQGLFSKELNFSECGYDANDGKNGNSHFLKPESGEILNFRESRINSYGGNGNLFSGQSQFAAEENKKRRSPTSRGSNDEGMLSFTSGVILPASNIKSSGGGDSDHSDLEASVVKEVDSSRVVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYITELKSKLQSLESDKEELQNQLDSVTKELELATKDSRYPGSGAPPSEREPNHASHHSSKLIDLDIDVKIIGWDAMIRIQCNKKNHPAARLMAAFMELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRLALSSKVGDVR 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0911 677 Coils Coil 535 569 - -
Glsi09g0911 677 SMART finulus 495 544 IPR011598 GO:0046983
Glsi09g0911 677 MobiDBLite consensus disorder prediction 424 450 - -
Glsi09g0911 677 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 72 252 IPR025610 -
Glsi09g0911 677 MobiDBLite consensus disorder prediction 409 497 - -
Glsi09g0911 677 PANTHER MYC 59 672 IPR045084 GO:0003700|GO:0006355
Glsi09g0911 677 MobiDBLite consensus disorder prediction 456 497 - -
Glsi09g0911 677 MobiDBLite consensus disorder prediction 42 60 - -
Glsi09g0911 677 Gene3D - 481 569 IPR036638 GO:0046983
Glsi09g0911 677 FunFam Transcription factor bHLH13 482 556 - -
Glsi09g0911 677 MobiDBLite consensus disorder prediction 567 591 - -
Glsi09g0911 677 CDD bHLH_AtAIB_like 486 562 - -
Glsi09g0911 677 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 489 538 IPR011598 GO:0046983
Glsi09g0911 677 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 492 559 IPR036638 GO:0046983
Glsi09g0911 677 Pfam Helix-loop-helix DNA-binding domain 493 538 IPR011598 GO:0046983
Glsi09g0911 677 MobiDBLite consensus disorder prediction 27 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0911 Glsi-ChrGlsi09 6303377 6305410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0911 1 674 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 55.328 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi09g0911 bHLH-MYC_N 3.7e-54 CL0161