Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0910 ATGGCGTCCGAGAGCTTCACCGACAAGAACGCTGTTTTCAAAAAACTTAAGGCCAAGTCCGATAATAAGATGTGTTTCGATTGTAATGCAAAGAATCCAACTTGGGCTTCCGTCACTTATGGAATCTTCCTCTGCATCGATTGCTCGGCTGTTCATCGCAGTCTTGGCGTGCACATTAGCTTTGTGAGATCTACGAATTTGGACTCATGGACTCCTGAGCAACTGAGATTAATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAGCAACATGGTTGGACTGATGGTGGTAAAATAGAGGCTAAGTATACATCCAGAGCTGCAGAGTTGTATAGACAAATTCTTTCAAAGGAAGTAGCAAAAAGTATGGCAGAGGAGGTGGGCTTGCCATCGTCACCTGTTGCTTCTCAGTCTGCACAAGTGGCTAATGGACTTTCTGATATCAGAACCAAAGAAGTACGGAAAGAGAACACTATGGGGAAACCAGAAATGCCTGAAACCACTTCTTCACCTAGAGCTTCACCCAGAGTGTCGCATATTTCCAGTACTGTAAAGAAGCCTATTGGTACCAAAAAAACTGGGAAGAGTGGGGGCCTTGGTGCCCGGAAGCTTACTAAAAAGCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAAGAACCACCAGCTCCAGTTTCTTCGTCAACAGACAACACTTTGCCGGCTGGGCCATCCCTTACATCTCGGTTTGAGTATGTAGACAATGTCCAGTCTTCTGAGTTGAATTCTGGAGGTGCACATGTGATTAGTCATGTGTCTCCACCAAAGTCATCAAGCTTCTTTGCAGATTTTGGAATGGATAGTGGTTTTCCAAAGAAATATGGGTTAAGTTCCCCGCAAGTGCAAGTTCAAGAATCTGATGAAGCAAGAAAGAAGTTCTCAAATGCTAAATCTATTTCTTCAGCCCAATTTTTTGGAGATCAGAGCAAAGCTGCGGATGTGGATGCTCAAGTTACTTTGTCAAAGTTTTCAGGTTCAACTGCCATATCTAGTGCTGATCTTTTTGGTCACTCAGCAGATAACTCCTCCATTGATCTTGCTGCTAATGACCTGCTCAACCGACTCTCTTTCCAGGCACAACAGGATATCTCATCCCTTAAAAACATTGCTGGAGAGACTGGAAAGAAGCTCAGCTCCTTGGCCTCCACTTTGATGACGGATCTTCAGGACAGAATCCTTTAA 1224 0.4428 MASESFTDKNAVFKKLKAKSDNKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLRLMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAKSMAEEVGLPSSPVASQSAQVANGLSDIRTKEVRKENTMGKPEMPETTSSPRASPRVSHISSTVKKPIGTKKTGKSGGLGARKLTKKPSESLYEQKPEEPPAPVSSSTDNTLPAGPSLTSRFEYVDNVQSSELNSGGAHVISHVSPPKSSSFFADFGMDSGFPKKYGLSSPQVQVQESDEARKKFSNAKSISSAQFFGDQSKAADVDAQVTLSKFSGSTAISSADLFGHSADNSSIDLAANDLLNRLSFQAQQDISSLKNIAGETGKKLSSLASTLMTDLQDRIL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0910 407 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Glsi09g0910 407 Gene3D Arf GTPase activating protein 1 136 IPR038508 -
Glsi09g0910 407 MobiDBLite consensus disorder prediction 223 240 - -
Glsi09g0910 407 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Glsi09g0910 407 MobiDBLite consensus disorder prediction 133 147 - -
Glsi09g0910 407 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 4 407 - -
Glsi09g0910 407 CDD ArfGap_ArfGap2_3_like 8 123 - -
Glsi09g0910 407 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Glsi09g0910 407 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Glsi09g0910 407 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Glsi09g0910 407 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Glsi09g0910 407 MobiDBLite consensus disorder prediction 131 240 - -
Glsi09g0910 407 Pfam Putative GTPase activating protein for Arf 12 106 IPR001164 GO:0005096
Glsi09g0910 407 SUPERFAMILY ArfGap/RecO-like zinc finger 11 125 IPR037278 -
Glsi09g0910 407 MobiDBLite consensus disorder prediction 164 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0910 Glsi-ChrGlsi09 6289833 6294146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0910 5 91 C2H2 Transcription Factor Family AT3G07940 45.455 1.60e-19 86.3