LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi09g0901	ATGGCTTCTCTTGGGAACCCAAGAAGTTGGGTTCCATACATGAACAACAAGGACTGTTCCCAAGGCTTCTGTAGCTTGTACTGTCCACAGTGGTGTTACGTAGTGTATCCTCCTCCTCCTCCCTTCGAATTTCCTGACGACGATTCAAGCCCGAACTTTTCCCCTCTCGTTATTGCAATCATTGGGATCTTGGCAAGTGCTTTTCTTCTTGCAAGCTACTATACGATTATATCCAAGTACTGTGGCAACAGAGAATCTGCACGTAGAGAGAATCATGATCCAAATGATGAATTGGAAGACAATCACAACCCCTCACTCCATGAGCCCTGGCATGTCTCCCCCGTTGGGTTAGATGAGGCTCTAATCAAGTCCATTACAGTGTGCAAGTACAAGAAAGCAGATGGGTTGGTTGGAGTCACTGATTGCTCTGTTTGTCTTAGTGAGTTTCAAGATGATGAGAGCATTAGACTCTTGCCAAAGTGCAGCCATGCTTTTCATCTCCCTTGTATTGACACATGGCTCAAATCCCACTCCAGTTGCCCTCTCTGTCGTGCCAGTATATTTACCTTCAACGCTTCAGCGCTTCAAGTATCAGCTCCGGAGATGGAAATTCCTTCGAGGAGTGAAACTTCCCCAGAAAATCAACATGCTAATGGAAATGTAGCTCCTGGAAGAGACAATGAAGTGCGTGTTGTGGAAGAAGAAATCCTACAATGTAGTAATACAGTTCCAAAGCCTGCATGGCGTGCTTTTAGCGATTTGGGAAATTTGCAGGGAAGGCATAGCATAATTGAGATTAGAGATGAAGGGTATGAATCTATCAGAAGGTCAATCTCTATGGATCATTCATTTCAAAGTAGTCTATCAGTTGTTAATGTTTACATGAATCAAGAACAAGATAATCAATTAGAAGAATGCTCTAACGAAGCTGGTCCATCAAAGAGATCGCGAGGAGAAAGCAGCAAATCTAACTATAGAAGAAGGGTGATGCATCGTGTATTGAGTCCAATTGCAATGAAGAGATCGTTTTCCAGTGGGAGATTCTTTCTCAGCAGGAATGGCAGAGGAAGGCAGGGGATAATCCCTGTCTGA	1092	0.4386	MASLGNPRSWVPYMNNKDCSQGFCSLYCPQWCYVVYPPPPPFEFPDDDSSPNFSPLVIAIIGILASAFLLASYYTIISKYCGNRESARRENHDPNDELEDNHNPSLHEPWHVSPVGLDEALIKSITVCKYKKADGLVGVTDCSVCLSEFQDDESIRLLPKCSHAFHLPCIDTWLKSHSSCPLCRASIFTFNASALQVSAPEMEIPSRSETSPENQHANGNVAPGRDNEVRVVEEEILQCSNTVPKPAWRAFSDLGNLQGRHSIIEIRDEGYESIRRSISMDHSFQSSLSVVNVYMNQEQDNQLEECSNEAGPSKRSRGESSKSNYRRRVMHRVLSPIAMKRSFSSGRFFLSRNGRGRQGIIPV	363

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi09g0901	363	MobiDBLite	consensus disorder prediction	301	326	-	-
	Glsi09g0901	363	SUPERFAMILY	RING/U-box	123	190	-	-
	Glsi09g0901	363	PANTHER	RING-H2 FINGER PROTEIN ATL16	41	318	IPR044600	GO:0016567\|GO:0016740
	Glsi09g0901	363	MobiDBLite	consensus disorder prediction	203	221	-	-
	Glsi09g0901	363	CDD	RING-H2_EL5-like	141	184	-	-
	Glsi09g0901	363	Pfam	Ring finger domain	141	184	IPR001841	-
	Glsi09g0901	363	SMART	ring_2	142	183	IPR001841	-
	Glsi09g0901	363	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	117	191	IPR013083	-
	Glsi09g0901	363	FunFam	RING-H2 finger protein ATL54	117	190	-	-
	Glsi09g0901	363	ProSiteProfiles	Zinc finger RING-type profile.	142	184	IPR001841	-
	Glsi09g0901	363	MobiDBLite	consensus disorder prediction	201	227	-	-
	Glsi09g0901	363	MobiDBLite	consensus disorder prediction	310	326	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi09g0901	Glsi-ChrGlsi09	6225804	6226895	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi09g0901	1	192	C3H Transcription Factor Family	AT3G03550	54.206	4.59e-67	214