Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0901 ATGGCTTCTCTTGGGAACCCAAGAAGTTGGGTTCCATACATGAACAACAAGGACTGTTCCCAAGGCTTCTGTAGCTTGTACTGTCCACAGTGGTGTTACGTAGTGTATCCTCCTCCTCCTCCCTTCGAATTTCCTGACGACGATTCAAGCCCGAACTTTTCCCCTCTCGTTATTGCAATCATTGGGATCTTGGCAAGTGCTTTTCTTCTTGCAAGCTACTATACGATTATATCCAAGTACTGTGGCAACAGAGAATCTGCACGTAGAGAGAATCATGATCCAAATGATGAATTGGAAGACAATCACAACCCCTCACTCCATGAGCCCTGGCATGTCTCCCCCGTTGGGTTAGATGAGGCTCTAATCAAGTCCATTACAGTGTGCAAGTACAAGAAAGCAGATGGGTTGGTTGGAGTCACTGATTGCTCTGTTTGTCTTAGTGAGTTTCAAGATGATGAGAGCATTAGACTCTTGCCAAAGTGCAGCCATGCTTTTCATCTCCCTTGTATTGACACATGGCTCAAATCCCACTCCAGTTGCCCTCTCTGTCGTGCCAGTATATTTACCTTCAACGCTTCAGCGCTTCAAGTATCAGCTCCGGAGATGGAAATTCCTTCGAGGAGTGAAACTTCCCCAGAAAATCAACATGCTAATGGAAATGTAGCTCCTGGAAGAGACAATGAAGTGCGTGTTGTGGAAGAAGAAATCCTACAATGTAGTAATACAGTTCCAAAGCCTGCATGGCGTGCTTTTAGCGATTTGGGAAATTTGCAGGGAAGGCATAGCATAATTGAGATTAGAGATGAAGGGTATGAATCTATCAGAAGGTCAATCTCTATGGATCATTCATTTCAAAGTAGTCTATCAGTTGTTAATGTTTACATGAATCAAGAACAAGATAATCAATTAGAAGAATGCTCTAACGAAGCTGGTCCATCAAAGAGATCGCGAGGAGAAAGCAGCAAATCTAACTATAGAAGAAGGGTGATGCATCGTGTATTGAGTCCAATTGCAATGAAGAGATCGTTTTCCAGTGGGAGATTCTTTCTCAGCAGGAATGGCAGAGGAAGGCAGGGGATAATCCCTGTCTGA 1092 0.4386 MASLGNPRSWVPYMNNKDCSQGFCSLYCPQWCYVVYPPPPPFEFPDDDSSPNFSPLVIAIIGILASAFLLASYYTIISKYCGNRESARRENHDPNDELEDNHNPSLHEPWHVSPVGLDEALIKSITVCKYKKADGLVGVTDCSVCLSEFQDDESIRLLPKCSHAFHLPCIDTWLKSHSSCPLCRASIFTFNASALQVSAPEMEIPSRSETSPENQHANGNVAPGRDNEVRVVEEEILQCSNTVPKPAWRAFSDLGNLQGRHSIIEIRDEGYESIRRSISMDHSFQSSLSVVNVYMNQEQDNQLEECSNEAGPSKRSRGESSKSNYRRRVMHRVLSPIAMKRSFSSGRFFLSRNGRGRQGIIPV 363
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0901 363 MobiDBLite consensus disorder prediction 301 326 - -
Glsi09g0901 363 SUPERFAMILY RING/U-box 123 190 - -
Glsi09g0901 363 PANTHER RING-H2 FINGER PROTEIN ATL16 41 318 IPR044600 GO:0016567|GO:0016740
Glsi09g0901 363 MobiDBLite consensus disorder prediction 203 221 - -
Glsi09g0901 363 CDD RING-H2_EL5-like 141 184 - -
Glsi09g0901 363 Pfam Ring finger domain 141 184 IPR001841 -
Glsi09g0901 363 SMART ring_2 142 183 IPR001841 -
Glsi09g0901 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 191 IPR013083 -
Glsi09g0901 363 FunFam RING-H2 finger protein ATL54 117 190 - -
Glsi09g0901 363 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Glsi09g0901 363 MobiDBLite consensus disorder prediction 201 227 - -
Glsi09g0901 363 MobiDBLite consensus disorder prediction 310 326 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Glsi09g0901 Glsi-ChrGlsi09 6225804 6226895 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0901 1 192 C3H Transcription Factor Family AT3G03550 54.206 4.59e-67 214