Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0898 ATGGATTACAGTCGAGATGGAAACGTTGTTCAAATAATTACTGGAGGGGGAAGTGAAAATTGGTCTGGGGACCAAGCCATCTGGGCAACCGAAGATGATTACCGATTTTGGAACAACGGTGACGCCGACACTTCGTCCAATTCGAATTACGATCAAAGGCAATCCCAATCACGCTCGGGAAGCGAACCCCCCAACAAGAAATCGAAGAATCTTCAGGACGTAACTTCGTCCAATCGGTCCAAGGCAATTGGGAAGATGTTTTTCAAGACCAAACTTTGCTGCAAATTCCGGGCTGGGACGTGCCCGTATATCACAAATTGCAATTTCGCTCACAGTATTGAAGAGCTTCGTCGTCCACCTCCGAATTGGCAAGAAATCGTGGCCGCCCACGAGGAAGAAAAATCCGTAATATCGGAGCCCAGGGAGGAATTTCAGATTCCATCAATCGAATCGTCGGGATTTGATGGCGAGACGCAGAGGTCGTACAAAGGTCGGCACTGTAAGAAGTTTTACACGGAAGAAGGGTGCCCATATGGAGATAATTGTACATTTCTTCACGATGAGCAATCCAAGAACCGAGAGAGTGTGGCTATAAGTCTAGGCCCTGGGTATGGTGGTGCTGGGAATGGATCCAATGCCAAGCCTTCAAACTGGAAAACAAGGATTTGCAATAAGTGGGAGATGACAGGATACTGCCCATTTGGAAACAAATGCCATTTTGCTCACGGTTCAGCAGAATTGCACCGATATGGAGGTGGACTTGTGGAGACAGAAAATAGAGACACTGCTTCTGCTGCTGCTCCTGACACAAAGCAGGGAGGGGTGCCTTCCAAAACTCCTGCTGATAATGCGGTTGCTTCGGTTACTCCAGTTGCTCATTCTGATGTCTATCATATGGGAGTTCCTTCGCAAAGGTCTTCTATTGTGATTCAAAGGCCAGGACAGAGAACTCATCAAAAGTGGAAAGGCCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGACGACATCGAATAG 1020 0.4706 MDYSRDGNVVQIITGGGSENWSGDQAIWATEDDYRFWNNGDADTSSNSNYDQRQSQSRSGSEPPNKKSKNLQDVTSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKSVISEPREEFQIPSIESSGFDGETQRSYKGRHCKKFYTEEGCPYGDNCTFLHDEQSKNRESVAISLGPGYGGAGNGSNAKPSNWKTRICNKWEMTGYCPFGNKCHFAHGSAELHRYGGGLVETENRDTASAAAPDTKQGGVPSKTPADNAVASVTPVAHSDVYHMGVPSQRSSIVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0898 339 MobiDBLite consensus disorder prediction 38 77 - -
Glsi09g0898 339 ProSiteProfiles Zinc finger C3H1-type profile. 217 245 IPR000571 GO:0046872
Glsi09g0898 339 Pfam CCCH-type zinc finger 165 187 IPR041367 -
Glsi09g0898 339 SUPERFAMILY CCCH zinc finger 85 118 IPR036855 GO:0046872
Glsi09g0898 339 SMART c3hfinal6 217 244 IPR000571 GO:0046872
Glsi09g0898 339 SMART c3hfinal6 87 113 IPR000571 GO:0046872
Glsi09g0898 339 SMART c3hfinal6 161 188 IPR000571 GO:0046872
Glsi09g0898 339 PANTHER CCCH ZINC FINGER/TIS11-RELATED 210 264 IPR045877 GO:0003729
Glsi09g0898 339 FunFam Zinc finger CCCH domain-containing protein 83 119 - -
Glsi09g0898 339 FunFam zinc finger CCCH domain-containing protein 15-like 211 250 - -
Glsi09g0898 339 ProSiteProfiles Zinc finger C3H1-type profile. 87 114 IPR000571 GO:0046872
Glsi09g0898 339 SUPERFAMILY CCCH zinc finger 160 189 IPR036855 GO:0046872
Glsi09g0898 339 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 112 IPR000571 GO:0046872
Glsi09g0898 339 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 218 243 IPR000571 GO:0046872
Glsi09g0898 339 Gene3D - 82 118 - -
Glsi09g0898 339 Gene3D - 211 249 - -
Glsi09g0898 339 FunFam Zinc finger, CCCH-type 155 193 - -
Glsi09g0898 339 Gene3D - 154 201 - -
Glsi09g0898 339 SUPERFAMILY CCCH zinc finger 214 248 IPR036855 GO:0046872
Glsi09g0898 339 MobiDBLite consensus disorder prediction 261 281 - -
Glsi09g0898 339 MobiDBLite consensus disorder prediction 39 77 - -
Glsi09g0898 339 ProSiteProfiles Zinc finger C3H1-type profile. 161 189 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0898 Glsi-ChrGlsi09 6222596 6224624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0898 219 247 C3H Transcription Factor Family AT1G68200 62.069 4.31e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi09g0898 zf-CCCH 1.2e-10 CL0537