Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0892 ATGGGTAGGCCACCATGTTGTGACGAGAGCGGTGTAAAGAAAGGGCCATGGACACCAGAAGAAGATGAGAAGCTAATGAATTATATTAGCAAACATGGCCATGGCAGCTGGAGAACACTTCCAAAGAATGCAGGTCTTAATAGGTGCGGCAAGAGTTGCAGGCTAAGGTGGACGAACTATCTTAGGCCTGATATTAAGAGAGGCAAGTTCACTGAAGAAGAGGAGCGATTGATCATCAACCTTCATTCAGTTCTTGGGAACAAGTGGTCGAAGATTGCAACCCATCTTCGAGGACGAACTGATAATGAAATCAAGAACTTCTGGAACACCCATATAAGGAAGAAGCTCCTCCAGATGGGTATTGACCCAGAAACTCACAAGCCAAGAACTGACTACAATCACCTCATGAATCTGTCACAGTTGCTTGGCATGTCAAACTTGGGAAATTTGACGAGCCCTTGGGGCCATGCTTTTGGATTACAGCAACCAGATGTGGCTCAATTAGCTAAAATCCATTTATTGCAAAACCTCTTGCAGGTTATAAATGGCAATTCTTTTGTTAATAACATGGAGAGTCTCTCTCTCCTAGGCAACGCCAACCACAATCTCGTCAAACCATTTGAAGCATATCTGAATGGGACAAACACCCTCGGCCTCCACAACAAGGACAAGGAGCCTTTCTTGATGAGAGATCAAGAATATGCAAACCCTGCTCTATTCCCTCCAGCACATAGTGATTCCCAGCAGGATATTTCAAAATCATGGACAGACTTAGAAGGAGGTTCTAATCAAGAAGTTTTTGTTTTTAACGATATTAGCAGCACTTCACATGAAAATCCATCAGAAAACCCACTTCCTGCGTTAGTTTCTGCAGTCTCTTCAGGGACTGGAACCTTGAACCAAATGGAAAGTAGCTCTAATACAGCTCAAATGTCCACCCATTCACCTTCCTCCTCGACCTTTGATGCTTGGGAGAAGCTCTTGGAAGATGACACAATTGATTCCTTCTGGAAAGAAATTCTAGACTTGACATCTACTTCTGCATCGCCGCTTTCATGGTAG 1062 0.4379 MGRPPCCDESGVKKGPWTPEEDEKLMNYISKHGHGSWRTLPKNAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEERLIINLHSVLGNKWSKIATHLRGRTDNEIKNFWNTHIRKKLLQMGIDPETHKPRTDYNHLMNLSQLLGMSNLGNLTSPWGHAFGLQQPDVAQLAKIHLLQNLLQVINGNSFVNNMESLSLLGNANHNLVKPFEAYLNGTNTLGLHNKDKEPFLMRDQEYANPALFPPAHSDSQQDISKSWTDLEGGSNQEVFVFNDISSTSHENPSENPLPALVSAVSSGTGTLNQMESSSNTAQMSTHSPSSSTFDAWEKLLEDDTIDSFWKEILDLTSTSASPLSW 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0892 353 FunFam MYB-related transcription factor 13 66 - -
Glsi09g0892 353 FunFam Transcription factor MYB39 69 130 - -
Glsi09g0892 353 CDD SANT 69 112 IPR001005 -
Glsi09g0892 353 CDD SANT 16 61 IPR001005 -
Glsi09g0892 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi09g0892 353 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 300 - -
Glsi09g0892 353 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Glsi09g0892 353 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi09g0892 353 Gene3D - 68 136 - -
Glsi09g0892 353 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi09g0892 353 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi09g0892 353 Gene3D - 13 66 - -
Glsi09g0892 353 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi09g0892 353 SMART sant 13 63 IPR001005 -
Glsi09g0892 353 SMART sant 66 114 IPR001005 -
Glsi09g0892 353 MobiDBLite consensus disorder prediction 274 319 - -
Glsi09g0892 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0892 Glsi-ChrGlsi09 6183780 6185123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0892 1 342 MYB Transcription Factor Family AT5G16770 45.983 1.06e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi09g0892 Myb_DNA-binding 3.7e-16 CL0123