Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0891 ATGTCAGACCGGGGTACATTCTCCGGTGACTCGACCATGGATACGAAGGAGAGAAAGAAGGAAAGAGAAGGAAAGAAGCAGAAAAAAGTTCCTTTGTTAAAGCTGTTCTCCTTCGCTGACTCTTATGATTATGTTCTAATGGCTATTGGATCTGTTGGGGCATGTGTTCACGGTGCTTCTGTGCCTGTTTTCTTCATCTTCTTTGGAAAGTTGATAAATATAATAGGCTTGGCTTATCTTTTTCCCAAAGAAGCTTCTCACAAAGTTGCTATGTATTCAATGGATTTCGTGTATCTGAGTATAGCAATATTATTTTCATCTTGGACAGAGGTAGCTTGTTGGATGCACACTGGGGAACGTCAAGCAGCAAAGATGAGAATGGCTTATTTAAGGTCAATGTTGAATCAAGATATAAGTCTATTTGATACTGAGGCATCAACAGGAGAGGTCATTTCTGCCATTACCAGTGACATTATCGTTGTTCAAGATGCTCTATCTGAGAAGGTAGGGAACTTCATGCACTACATCAGCCGATTTATAGCAGGCTTCACTATTGGCTTTGTCAGAGTGTGGCAGATTAGTTTAGTGACACTTTCAATTGTCCCCTTGATTGCACTTGCTGGAGGTCTTTATGCTTACGTAACAATAGGGCTTGTTGCAAAAGTTCGAAAAGCCTACGTGACGGCTGGTGAGATAGCTGAAGAGGTTATAGGCAATGTTAGAACAGTACAGGCGTTTGCAGGAGAAGACAGAGCAGTAAAAGCATACAAAGCGGCTCTAATGAGTACTTACAAAAACGGTCGAAAAATAGGTTTAGCAAGGGGCCTGGGGCTAGGATCCATGCATTGTGTCCTTTTTCTATCATGGTCCCTGCTTGTCTGGTTCACTAGTATGGTTGTTCACAAGAATATCGCCAATGGTGGAGAGTCTTTCACTACCATGCTCAATGTTGTTATCTCTGGCCTGTCACTTGGGCAGGCAGCCCCAGATATCTCTGCCTTTGTCCGAGCAAAGGCAGCAGCATATCCCATTTTTGAGATGATAGAGAGGAACACAATGAGCAAAATAAGCTCAAAAACTGGTCACAAACTAAGCAAATTGGAGGGCCACATCCAATTCAAGGATGTCTGCTTCAGTTACCCATCTCGTCCGGATGTAGTTGTCTTCAACAATCTTAATATAGACATTCGTTCAGGGAAAATTGTAGCTGTTGTTGGGGGAAGTGGTTCTGGAAAGAGCACTATTATATCACTAATTGAGCGCTTCTACGAACCCCTTTCTGGACAGATCCTATTAGATGGGAATAATATCAGGGAACTTGATCTCAAATGGTTAAGGCAGCAAATTGGTTTGGTTAATCAAGAACCTGCCCTTTTTGCTACAAGCATCAGGGAGAACATACTGTATGGAAAAGATGATGCCACTCTTGAAGAACTAAAACGCGCTGTGAAGCTTTCAGATGCTCAGTCTTTCATTAACAATCTTCCTGATCGATTAGAAACTCAGGTTGGTGAGAGAGGGATACAATTATCAGGTGGGCAAAAGCAAAGGATTGCAATATCTCGTGCTATAGTGAAGAATCCGTCGATCCTTTTATTGGATGAAGCAACGAGTGCCCTGGATGCAGAGTCTGAGAAGAGTGTACAGGAGGCTCTTGATCGTGTCATGGTTGGTAGAACTACTGTGATAATAGCGCACAGACTTTCAACAATTAGGAATGCAGATGTGATCGCTGTTGTTCAAGGAGGGAAAATTGTGGAAACTGGCAGCCATGAAGAGCTAATTACCAATCCAAATAGTGTATATGCATCTCTTGCTCAACTCCAGGAAACTGCTTCTCTGCAAAGACACCCCTCAGTGGGTCCTAGCTTAGGACGACCACCAAGCATAAAGTACTCAAGAGAACTATCTCGTACCACAACAAGTTTTAGTGGAAGTTTTCGATCAGATAAAGAATCCATTGGCCGTGTTGGTGCTGATGGAGTGGAAAGTGTGGGAAAGTCAAGGCATGTTTCAGCAAGAAGATTATATTCCATGGTAGGACCTGATTGGTTTTATGGTGTTTTTGGGACCTTGTGTGCTTTTATCGCTGGAGCCCAGATGCCACTTTTTGCTCTTGGAATCTCTCACGCTCTTGTATCATATTATATGGACTGGGATACAACACGTCACGAAATTAAAAAAATTGCTTTTCTCTTCTGCGGGGCAGCAGTTATAACTGTCATTGTCCATGCCGTTGAACACCTTTGTTTTGGTATCATGGGCGAACGACTTACTCTTCACGTCAGAGAAATGATGTTTTCTGCTATTTTGAAGAATGAAATTGGTTGGTTTGATGATACAAACAACACAAGTTCCATGCTTTCGTCCCGTTTAGAGACCGATGCAACTTTGTTACGAACTATAGTTGTTGATCGGTCTACAATTCTCTTACAAAATGTGGGTCTGGTTGTTGCTTCATTTATTATTGCTTTCATCTTGAACTGGAGGATAACGCTGGTTGTCTTGGCCACATATCCTTTGATCATTTGCGGTCACATTAGCGAGAAACTTTTCATGCAAGGATATGGTGGCAACTTGAGCAAAGCATATCTAAAAGCCAACATGCTGGCTGGGGAGGCTGTGAGTAATATACGCACAGTTGCTGCATTTTGTTCTGAAGAAAAGGTCCTGGAACTTTATGCTAATGAGCTTGTTGAGCCTTCCAAGCGTTCTTTTAAACGGGGCCAAATTGCAGGCATATTCTACGGCATTTCCCAGTTCTTCATTTTCTCATCTTATGGCCTTGCTTTATGGTATGGTTCAGTTTTGATGGGAAAGGAACTTGCTAGCTTTAAATCAATCATGAAGTCATTTATGGTTTTAATTGTAACAGCACTGGCTATGGGGGAGACTTTAGCACTGGCTCCAGATCTTTTGAAAGGAAACCAAATGGTTGCATCAGTTTTTGACGTTATGGACAGAAAGTCAGGAGTAATGGGTGATACCGGAGAGGAGCTAAAGACAGTAGAGGGAACAATTGAGTTAAGAAGTATTCATTTCAGCTACCCTTCAAGGCCAGATGTGGTGATTTTTAAGGATTTTAATCTTAGAGTGCCTTCAGGCAAGAGTATTGCCTTAGTGGGGCAAAGTGGTTCTGGTAAAAGCTCTGTTATCTCCCTTATTCTCAGGTTTTATGATCCAACATCTGGAAAGGTGATGATTGACGGAAAAGACATCAAGAGAGTTCATCTGAGATCACTGAGGAAACACATAGGTCTTGTGCAACAAGAACCGGCTCTATTTGCAACATCAATTTATGAAAATATTTTATATGGAAAGGAAGGAGCCTCTGAATCAGAACTGATTGAAGCAGCTAGGCTAGCCAATGCTCATAGTTTTATCAGTGCTCTTCCTCAGGGGTACTCCACCAAAGTGGGTGAGCGAGGAGTTCAACTATCTGGTGGCCAAAAGCAAAGGGTAGCCATTGCCAGAGCGGTTTTGAAGAACCCAGCGATCTTGCTACTAGATGAAGCCACAAGCGCACTGGATATGGAGTCAGAGCGTGTGGTGCAGCAAGCCCTGGACAGGTTGATGCATAATAGAACAACAGTTATGGTGGCACATAGGCTATCCACAATAAGAAATGCAGATCAAATCTCAGTTTTGCAGGATGGAAAGATAGTAGAGCAAGGGACTCATTCAACTCTAATAGAGAACAAAAATGGAGCATACTATAAATTAGTCAACCTTCAACGACAACAACAACATTGA 3753 0.4231 MSDRGTFSGDSTMDTKERKKEREGKKQKKVPLLKLFSFADSYDYVLMAIGSVGACVHGASVPVFFIFFGKLINIIGLAYLFPKEASHKVAMYSMDFVYLSIAILFSSWTEVACWMHTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFIAGFTIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLVAKVRKAYVTAGEIAEEVIGNVRTVQAFAGEDRAVKAYKAALMSTYKNGRKIGLARGLGLGSMHCVLFLSWSLLVWFTSMVVHKNIANGGESFTTMLNVVISGLSLGQAAPDISAFVRAKAAAYPIFEMIERNTMSKISSKTGHKLSKLEGHIQFKDVCFSYPSRPDVVVFNNLNIDIRSGKIVAVVGGSGSGKSTIISLIERFYEPLSGQILLDGNNIRELDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEELKRAVKLSDAQSFINNLPDRLETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVIIAHRLSTIRNADVIAVVQGGKIVETGSHEELITNPNSVYASLAQLQETASLQRHPSVGPSLGRPPSIKYSRELSRTTTSFSGSFRSDKESIGRVGADGVESVGKSRHVSARRLYSMVGPDWFYGVFGTLCAFIAGAQMPLFALGISHALVSYYMDWDTTRHEIKKIAFLFCGAAVITVIVHAVEHLCFGIMGERLTLHVREMMFSAILKNEIGWFDDTNNTSSMLSSRLETDATLLRTIVVDRSTILLQNVGLVVASFIIAFILNWRITLVVLATYPLIICGHISEKLFMQGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVLELYANELVEPSKRSFKRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFDVMDRKSGVMGDTGEELKTVEGTIELRSIHFSYPSRPDVVIFKDFNLRVPSGKSIALVGQSGSGKSSVISLILRFYDPTSGKVMIDGKDIKRVHLRSLRKHIGLVQQEPALFATSIYENILYGKEGASESELIEAARLANAHSFISALPQGYSTKVGERGVQLSGGQKQRVAIARAVLKNPAILLLDEATSALDMESERVVQQALDRLMHNRTTVMVAHRLSTIRNADQISVLQDGKIVEQGTHSTLIENKNGAYYKLVNLQRQQQH 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0891 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1007 1243 IPR003439 GO:0005524
Glsi09g0891 1250 PANTHER ABC TRANSPORTER B FAMILY 10 612 IPR039421 -
Glsi09g0891 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 371 607 IPR003439 GO:0005524
Glsi09g0891 1250 SUPERFAMILY ABC transporter transmembrane region 674 988 IPR036640 GO:0005524|GO:0016020
Glsi09g0891 1250 FunFam ABC transporter B family member 4 997 1249 - -
Glsi09g0891 1250 SUPERFAMILY ABC transporter transmembrane region 35 341 IPR036640 GO:0005524|GO:0016020
Glsi09g0891 1250 FunFam ABC transporter B family member 19 361 610 - -
Glsi09g0891 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1000 1245 IPR027417 -
Glsi09g0891 1250 ProSitePatterns ABC transporters family signature. 510 524 IPR017871 GO:0005524|GO:0016887
Glsi09g0891 1250 FunFam ABC transporter B family member 2 808 1004 - -
Glsi09g0891 1250 Pfam ABC transporter 1026 1174 IPR003439 GO:0005524
Glsi09g0891 1250 Gene3D - 997 1250 IPR027417 -
Glsi09g0891 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 688 974 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi09g0891 1250 MobiDBLite consensus disorder prediction 10 25 - -
Glsi09g0891 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 609 IPR027417 -
Glsi09g0891 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 344 - -
Glsi09g0891 1250 SMART AAA_5 398 584 IPR003593 GO:0016887
Glsi09g0891 1250 SMART AAA_5 1034 1220 IPR003593 GO:0016887
Glsi09g0891 1250 CDD ABC_MTABC3_MDL1_MDL2 1007 1245 - -
Glsi09g0891 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 336 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi09g0891 1250 Gene3D - 369 635 IPR027417 -
Glsi09g0891 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 677 990 - -
Glsi09g0891 1250 CDD ABC_MTABC3_MDL1_MDL2 371 609 - -
Glsi09g0891 1250 Pfam ABC transporter transmembrane region 689 960 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi09g0891 1250 Pfam ABC transporter transmembrane region 49 319 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi09g0891 1250 FunFam ABC transporter B family member 1 34 370 - -
Glsi09g0891 1250 MobiDBLite consensus disorder prediction 1 25 - -
Glsi09g0891 1250 ProSitePatterns ABC transporters family signature. 1146 1160 IPR017871 GO:0005524|GO:0016887
Glsi09g0891 1250 Gene3D ABC transporter type 1, transmembrane domain 95 976 IPR036640 GO:0005524|GO:0016020
Glsi09g0891 1250 Pfam ABC transporter 390 538 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0891 Glsi-ChrGlsi09 6169300 6175285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0891 2 1246 Calmodulin-binding Proteins AT2G36910 49.024 0.0 1200