Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0890 ATGGTTTCAAGGTCGTATTCTAATCTGTTAGATCTTACTTCTTATGGCTCCCCAACTTTTGGTCGTGAGAAGAAAAGGCTACCTCGAGTAGTGACTGTTGCTGGAGTACTGTCTGAACTAGATGATGAGAATAACAGTGCTGGCTCTGATGCTCCCTCATCTATCTCTCAAGATAGGATGATTATTGTAGGTAACCAGCTTCCATTACAGGCACGGAGAAAAGATAATGGTATGTGGGATTTCACCTGGGACGAAGACTCACTTCTTTTACAGCTGAAAGATGGTCTTGGTGATGATGTAGAAGTAATCTATATTGGGTGTCTCAAAGAAGAAGTTGAGCCAAGTGAGCAAGATGATGTTGCCCAGTACCTGCTTGACACTTTCAAATGTGTCCCTACATTCCTCCCTACCGAGCTTTTTAGTAAATTCTACCATGGGTTCTGCAAACAACATCTGTGGCCTTTATTTCACTACATGCTTCCATTGTCACCTGATCTTGGTGGTCGATTTGATCGGTCTCTTTGGCAAGCTTATGTCTCTGTGAATAAGATATTTGCAGATAAAGTAATGGAAGTCATTAGCCCCGATGATGACTTTGTGTGGGTTCATGACTACCATTTGATGGTTCTGCCAACATTTTTGAGAAAGAGATTTAACCGGGTGAGGTTAGGATTCTTCCTCCATAGCCCATTCCCCTCCTCTGAGATATACCGAACACTTCCGGTTAGGAATGAACTTCTTAGAGCTCTTCTGAACACTGATCTTATCGGGTTTCATACTTTTGATTATGCGAGGCACTTCCTCTCATGTTGTGGTAGAATGCTTGGGCTCTCTTATCAATCCAAGCGAGGCTACATAGGTATTGAGTACTATGGTAGAACTGTTAGCATTAAAATTCTTCCTGTTGGAATACCTATAGGTCAGCTTCAATCTGTCATGAATGTTCCTGAGACAGAAAGTAAGGTTGCAGAGTTACAAGATCAATTCAGAGGTCAAATTGTGATGCTTGGGGTTGATGACATGGATATCTTTAAAGGAATTACCTTGAAACTTTTGGCCATGGAACAGTTGCTCCTACAGCATCCTGATAAGAGGGGCAAGGTTGTTCTGGTCCAAATTGCAAACCCTGCAAGAGGCCGAGGGAAGGATGTACAGGAGGTAAAAAGTGAAATTGATGCCATAGTGAAAAGGATTAATGATACATTTGGAAGGTCCGGATACACACCTGTGATCTTGATTGATACACCACTTCAGTTTTATGAGCGAATTGCTTTTTACATGATTGCAGAATGTTGTCTTGTTACAGCAGTCAGAGATGGGATGAACCTTATACCCTATGAATACATCATATGTCGACAAGGAAATGAGAAGCTAGACAAGATTTTGGGGATAAACTCATTCACCCAGAAGAAAAGCATGCTGGTAGTATCTGAGTTCATTGGCTGTTCCCCATCGTTAAGTGGGGCAATACGAGTGAATCCATGGAACATTGATGCTGTTGCTGAAGCTATGGTTTTTTCCTTGACAGTCCCAGAGTCTGAAAAACAGATGCGGCATGAGAAGCATTATAGGTATGTTAGTACACATGATGTTGCATATTGGGCACATAGCTTCATGCAGGATTTGGAAAGGGCATGTAGGGATTATCTCAGGAAGAGGTGCTGGGGAATTGGTTTTGGTTTAGGGTTTCGGGTAATTGCATTAGATCCAAGTTTCAGAAAGCTATCTGTTGAGCATATAGTTTCAGCTTATAAGAGGACCAAGCAGCGAGCAATTCTTTTGGATTATGATGGTACCCTAATGCAGCCTGGATCAATTAGTACAAATCCTAATGCTGAGACTGTTAAAATGTTGAACAGCTTGTGCAGGGATACCAAGAATGTTGTTTTCATAGTTAGTGGCAAGGAGAGAAAGACTCTCATTGAATGGTTCTCTTCTTGTGAAAGGTTGGGGATTGCTGCAGAACATGGTTATTTTGTAAGGACTTATGATGATGCAGAATGGGAAACTAGTGTTTTGGTGCCAGATTTTGGCTGGAAACAGATAGCTGAGCCAGTAATGCAATTATACATGGAAACAACTGATGGTTCTAATATAGAGGCCAAAGAGAGTGCTCTTGTTTGGAATTATCAACATGCAGATCGGGATTTTGGTTCATGTCAGGCTAAGGAGCTTTTAGATCATCTGGAAAGTGTACTTGCCAATGAACCTGTTTCGGTTAAAAGTGGTCATTACATTGTAGAAGTTAAACCTCAGGGCGTCAATAAGGGTATTGTAGCAGAGCATCTTCTCTCAACAATGCACCAAAAGGGAGTGCTTCCCGATTTTGTTCTTTGTATTGGAGATGACAGATCAGACGAGGATATGTTTAGGGTTATAACGAGTGCAAGGGTGCGTCTCTCCCCTGCTGCCGAAGTGTTTGCTTGTACTGTAGGGCAGAAACCTAGCAAGGCCAAGTATTTCTTGGAAGACACTACCGAGATTTTGAGAATGTTGGAGGGCCTTGCCGGTGCTTCAGGGCAGTGA 2526 0.4216 MVSRSYSNLLDLTSYGSPTFGREKKRLPRVVTVAGVLSELDDENNSAGSDAPSSISQDRMIIVGNQLPLQARRKDNGMWDFTWDEDSLLLQLKDGLGDDVEVIYIGCLKEEVEPSEQDDVAQYLLDTFKCVPTFLPTELFSKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYVSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRVRLGFFLHSPFPSSEIYRTLPVRNELLRALLNTDLIGFHTFDYARHFLSCCGRMLGLSYQSKRGYIGIEYYGRTVSIKILPVGIPIGQLQSVMNVPETESKVAELQDQFRGQIVMLGVDDMDIFKGITLKLLAMEQLLLQHPDKRGKVVLVQIANPARGRGKDVQEVKSEIDAIVKRINDTFGRSGYTPVILIDTPLQFYERIAFYMIAECCLVTAVRDGMNLIPYEYIICRQGNEKLDKILGINSFTQKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMVFSLTVPESEKQMRHEKHYRYVSTHDVAYWAHSFMQDLERACRDYLRKRCWGIGFGLGFRVIALDPSFRKLSVEHIVSAYKRTKQRAILLDYDGTLMQPGSISTNPNAETVKMLNSLCRDTKNVVFIVSGKERKTLIEWFSSCERLGIAAEHGYFVRTYDDAEWETSVLVPDFGWKQIAEPVMQLYMETTDGSNIEAKESALVWNYQHADRDFGSCQAKELLDHLESVLANEPVSVKSGHYIVEVKPQGVNKGIVAEHLLSTMHQKGVLPDFVLCIGDDRSDEDMFRVITSARVRLSPAAEVFACTVGQKPSKAKYFLEDTTEILRMLEGLAGASGQ 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0890 841 Pfam Trehalose-phosphatase 593 825 IPR003337 GO:0003824|GO:0005992
Glsi09g0890 841 Pfam Glycosyltransferase family 20 59 543 IPR001830 GO:0003824|GO:0005992
Glsi09g0890 841 CDD GT20_TPS 59 543 IPR001830 GO:0003824|GO:0005992
Glsi09g0890 841 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 719 841 - -
Glsi09g0890 841 Gene3D - 589 703 IPR023214 -
Glsi09g0890 841 Gene3D - 715 841 IPR023214 -
Glsi09g0890 841 Gene3D Glycogen Phosphorylase B; 311 527 - -
Glsi09g0890 841 FunFam Alpha,alpha-trehalose-phosphate synthase 312 527 - -
Glsi09g0890 841 CDD HAD_TPP 591 825 - -
Glsi09g0890 841 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 36 836 IPR001830 GO:0003824|GO:0005992
Glsi09g0890 841 NCBIfam trehalose-phosphatase 588 836 IPR003337 GO:0003824|GO:0005992
Glsi09g0890 841 SUPERFAMILY HAD-like 590 836 IPR036412 -
Glsi09g0890 841 Gene3D Glycogen Phosphorylase B; 52 310 - -
Glsi09g0890 841 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 52 310 - -
Glsi09g0890 841 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 589 706 - -
Glsi09g0890 841 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 547 - -
Glsi09g0890 841 NCBIfam HAD-IIB family hydrolase 592 793 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0890 Glsi-ChrGlsi09 6139316 6142848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0890 1 839 Trehalose Biosynthesis Gene Families AT4G17770 77.699 0.0 1400