Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0888 ATGGTAGCCAACGTGGACCTTGGAAATGACAGTATGGAGGACAAGGATTCTACTAATGAGTCCTCAGCTGGGGAGAAGGAGGGAGATATGCAAGCTGTGCAGGAAGGGAAAGGGGAGGACCCTGAAGATTTTGTAGTTTTTGAGGAGTTTGAGGGAAGGCATGCCAACCCTGAGTTCATTCTTTCTCGAGAGGAAGAAGAGGCGCATAGACGGAAAATTGGGCTTCCTTCCCAAAACCCAGTTGCATCTTTCCAGCGACCTCAGACACCAATTTCGACCCACTTACAGGCACACGCTAAGTTTGTCATGTTTTCAGAGGAGGTAACCAACCAGATGACTACCTCGCCAGGCAAGGATTTATGGGGACTTAAATCATCTGGAACATGCCCCCAGGAGCTGGGCTTATCTCTTCCAGCTTATATGGCGTTTGTTCGGTTTAAGTTTCGTGCCAGTGGCCAAGCATTGCTTCCCTTTCGAAACCATAAAGTTTATATAACTGTTTTTCCTTTCAACTTTCTTTTGGTGGTAAATCAAATTTCTGATATGGACGGAGTTAATAACAGCGGCACCGGAGGCGGCATGCAGACGCCGGCCCCAGCGCCCATTCCTAATGCTAATGCGCCGCCGCCATTTCTTAGTAAGACATATGACATGGTGGATGACCCGTCCAGTGATGCGATCGTGTCTTGGAGCTCAACCAATAATAGCTTTGTGGTTTGGAACCCACCCGAGTTTGCCAGGGACCTTTTGCCTAAGTACTTCAAGCACAATAACTTCTCCAGCTTTGTTAGGCAGTTGAACACATATGGTTTCAGGAAGGTTGATCCAGATCGCTGGGAATTTGCAAATGAGGGCTTTTTAAGAGATCAGAAGCACTTGCTAAAGAATATAACCCGGCGAAAACCTGCCCATGGTCATAGTAATCAACAGGCACAACAATCACATGGACAGAGCTCATCTGTAGGGGCATGTGTTGAGGTTGGGAAGTTTGGTCTTGAGGAGGAGGTTGAGAGGCTTAAAAGAGATAAGAATGTGCTCATGCAGGAGCTTGTGAGGCTGAGACAGCAGCAACAGGCCACTGATAACCAGCTGCAAGCGATGGTTCAGCGCCTTCAGGGAATGGAACAGCGACAGCAACAAATGATGTCATTCCTTGCAAAGGCTGTTCAGAGCCCTGGCTTATTTGCTCAGTTTGTACAGCAGCAAAATGAGAACAATAGGCGCTTAACTGAAGCCAACAAAAAACGGCGGCTTAAGCAGCAAGGTATTGTTAAAACAGAGAATGCTGCCATTCCTGATGGACAAATTGTCAAGTATCAGCCTCTGATGAATGAAGCTGCAAAAACAATGCTGAGGCAGATCATGAAATTGGATACTTCTAGGCTAGAATCTCTTAATAATAACTCTGATAGTTATCTAATTGGTGATGGCTCATTAACATCCAGTGCAATGAACAGTGGCAGCTCTTCAAGTCGGAGTTATGGAGTAACACTTCAAGAGGTCCCACCAACTTCACGGCAGTCTTCTCTCATTCCAGCTGCATCAGGGACTTCAGGGAATGCTTCCTCAGCTGGAAATTCTGAAATACCATCTTTTCCCCCATCTGCAGCTTCTGGAAAACTTACAACTGCTCAATACCCAGATGTAAATGTGCTGTTTGGAGCATCTGAAGCACCTTCTATTCCTGTTCAGCTTTCTCCGGTACCAGAGATAGTGACAGGAAGTATTCTTGACATTCCTGAAGAAAATTGTATGGGGCCTGAGACAGGCAATGAGGGATACATCGATCCTACTTCATTGGGAGTAAATGGGTCATTGCCTATTGATATTGGCAGTATTTCGCCCGATACAGACATTGATGACTTGTTACACAATTCTTTCTGGGATGACTTTTTGCAAAGTCCACTGCCAGAGGATATTGAGACTGATGCTGCTGAAGTGTCCAAAGGGAATGAGGTGCAGCCAATGCAAAATGGATGGAACAAATCTCAGCATATGGACCAACTTACAGAGCAGATGGGTCTTCTTTCTTCTGAGGCAAAAAATGTTTGA 2052 0.4581 MVANVDLGNDSMEDKDSTNESSAGEKEGDMQAVQEGKGEDPEDFVVFEEFEGRHANPEFILSREEEEAHRRKIGLPSQNPVASFQRPQTPISTHLQAHAKFVMFSEEVTNQMTTSPGKDLWGLKSSGTCPQELGLSLPAYMAFVRFKFRASGQALLPFRNHKVYITVFPFNFLLVVNQISDMDGVNNSGTGGGMQTPAPAPIPNANAPPPFLSKTYDMVDDPSSDAIVSWSSTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRDQKHLLKNITRRKPAHGHSNQQAQQSHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQAMVQRLQGMEQRQQQMMSFLAKAVQSPGLFAQFVQQQNENNRRLTEANKKRRLKQQGIVKTENAAIPDGQIVKYQPLMNEAAKTMLRQIMKLDTSRLESLNNNSDSYLIGDGSLTSSAMNSGSSSSRSYGVTLQEVPPTSRQSSLIPAASGTSGNASSAGNSEIPSFPPSAASGKLTTAQYPDVNVLFGASEAPSIPVQLSPVPEIVTGSILDIPEENCMGPETGNEGYIDPTSLGVNGSLPIDIGSISPDTDIDDLLHNSFWDDFLQSPLPEDIETDAAEVSKGNEVQPMQNGWNKSQHMDQLTEQMGLLSSEAKNV 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0888 683 MobiDBLite consensus disorder prediction 1 42 - -
Glsi09g0888 683 MobiDBLite consensus disorder prediction 9 23 - -
Glsi09g0888 683 Pfam HSF-type DNA-binding 211 300 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi09g0888 683 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 204 494 IPR027725 -
Glsi09g0888 683 Coils Coil 329 356 - -
Glsi09g0888 683 SUPERFAMILY "Winged helix" DNA-binding domain 206 300 IPR036390 -
Glsi09g0888 683 Gene3D - 204 301 IPR036388 -
Glsi09g0888 683 MobiDBLite consensus disorder prediction 301 320 - -
Glsi09g0888 683 ProSitePatterns HSF-type DNA-binding domain signature. 250 274 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi09g0888 683 MobiDBLite consensus disorder prediction 482 536 - -
Glsi09g0888 683 FunFam Heat shock transcription factor 1 204 301 - -
Glsi09g0888 683 SMART hsfneu3 207 300 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi09g0888 683 MobiDBLite consensus disorder prediction 303 320 - -
Glsi09g0888 683 PRINTS Heat shock factor (HSF) domain signature 262 274 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi09g0888 683 PRINTS Heat shock factor (HSF) domain signature 211 234 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi09g0888 683 PRINTS Heat shock factor (HSF) domain signature 249 261 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0888 Glsi-ChrGlsi09 6126940 6132946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0888 189 683 HSF AT1G32330 53.057 5.18e-166 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi09g0888 HSF_DNA-bind 6.3e-33 CL0123