Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0884 ATGAGCTTTCAGGATATCGAAGCTGGCCGCACTTTCGCTTCCCGGCGAAATCTCATCAATGCCAACCAAGACCCTACTCAAGCGGTGGCCTCCGGTATTTTTCAGATCAACACCGCCGTTTCCACGTTCCAGAGGCTCGTCAATACCCTTGGAACCCCGAAAGACACGCCCGAGCTACGTGACAAGCTGCACAAGACAAGACTACATATTGGGCAATTGGTGAAGGAAACATCAGCTAAACTCAAGCAGGCTAGTGAAATAGATCACCATGTTGAAGTTAATGCAAGTAAGAAGATAGCAGATGCTAAACTAGCAAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAAAAGGCACAGCAGCTTGCAGCCACAAGGGAAACAGCTTATACCCCTTTTGTTCCGCAAGCAGTTCTTCCTTCCAGTTATACAGCCAGTGAGGTAGATGTTAGTTCTGATAAGACACCAGAGCAGCGTGCTCTTCTTGTGGAATCCAGAAGGCAGGAGGTGTTATTGTTGGATAATGAGATTGCCTTCAATGAGGCTATAATTGAGGAACGTGAGCATGGCATTCAAGAAATCCAGCAGCAAATTGGTGAAGTAAATGAGATTTTCAAGGATCTTGCTGTGCTTGTTCATGAGCAAGGAACTATGATCGATGATATTGGATCGAATATTGAGAACTCCCACACAGCAACCTCACAAGCAAAATCTCAACTTGTGAAAGCTGCAAAGACCCAAAGATCAAATTCGTCTCTGACTTGCTTGCTCTTGGTGATATTTGGGATTGTGCTTCTTATCGTGATCATAGTTCTTGCTGCTTAG 822 0.4465 MSFQDIEAGRTFASRRNLINANQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELRDKLHKTRLHIGQLVKETSAKLKQASEIDHHVEVNASKKIADAKLAKDFQAVLKEFQKAQQLAATRETAYTPFVPQAVLPSSYTASEVDVSSDKTPEQRALLVESRRQEVLLLDNEIAFNEAIIEEREHGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHTATSQAKSQLVKAAKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0884 273 CDD SNARE_Qa 183 241 - -
Glsi09g0884 273 CDD SynN 23 148 IPR006011 GO:0016020
Glsi09g0884 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Glsi09g0884 273 SMART SynN_4 13 127 IPR006011 GO:0016020
Glsi09g0884 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Glsi09g0884 273 Gene3D - 173 273 - -
Glsi09g0884 273 Pfam SNARE domain 216 268 IPR000727 -
Glsi09g0884 273 FunFam Syntaxin-22 like 173 273 - -
Glsi09g0884 273 PANTHER SYNTAXIN 26 265 IPR045242 -
Glsi09g0884 273 Gene3D - 19 133 - -
Glsi09g0884 273 FunFam Syntaxin-22 like 20 133 - -
Glsi09g0884 273 SMART tSNARE_6 175 242 IPR000727 -
Glsi09g0884 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Glsi09g0884 273 SUPERFAMILY t-snare proteins 20 235 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0884 Glsi-ChrGlsi09 6108285 6111366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0884 1 261 SNARE and Associated Proteins AT5G46860 79.310 2.51e-149 416