Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0883 ATGACACTGGTGAGACAGAGGAGACACCAGCAAGCTCTAAGGCTTTCCTTACCACCACCTCCAATTCCGGTAGCTGATTTCCGTTCAGCCTCTGATGCAGACTTCCCGGGCCTTGAGAAACTTAAAGTTCTTGGCCATGGCAATGGTGGCACAGTCTATAAAGTCCATAACAAAAAGAACCAATCCTTTTACGCCTTGAAAGTCCTCCGCTTCAATCAGAATGTTTTTGAAATCTGCCAACAGGCTACACTTGAGGCTGAGATTCTTAAACGAGTGGATTCCCCATACATTGTAAGGTGCCATGCTGTTCTTGACAATGGTTGCAGTGAAGCTCCTGAAGATGGAGGCGACCTTAGCTTTGTCATGGAATACATGGAAGGAGGATCGTTGCATGATGTGTTAAGAGAACACCATGGACTGCCAGAGGAGGTGATCTCTGTCTTGGCTAGGCGTGTCTTGGAAGGACTTAACTATTTGCATGGCATGCACATAGTGCACAGGGATATTAAACCTTCAAATTTGCTTGTGAATGAGAAGGGGGAGGTGAAGATTGCAGATTTTGGAGTGAGTCACGTAGTGGAAGGTAGGTTTGAGGCATCTGAGTTCAACGCAGGTACATGTGCCTACATGAGCCCAGAAAGAGTTGATCCAGGGAGCTGGGGTGGTGAAAATGCCGATGGGTTTGCCGGGGATGTGTGGTCACTGGGAGTGGTGATGTTGGAATGTCTTCTCGGTCACTTTCCCTTGATTGGTCCAGGCCAGAAACCAGATTGGGCAACATTAATGTGGGCAATTTGCTTTGGGGAGAATCTGGAGTTGCCAGAGAAGGCATCGTCTGAGTTCAAAAATTTTGTGCGGAGGTGTCTAGAGAAGGATTGGAGGAAGAGAGCAACAGCGACTGAGCTTCTTGATCACCCTTTTGTGAATAGAAAGAGTTGTTGTTCTAGCAAAGGGCTGGTCGATTACGTTCTGCATGGTTAA 981 0.473 MTLVRQRRHQQALRLSLPPPPIPVADFRSASDADFPGLEKLKVLGHGNGGTVYKVHNKKNQSFYALKVLRFNQNVFEICQQATLEAEILKRVDSPYIVRCHAVLDNGCSEAPEDGGDLSFVMEYMEGGSLHDVLREHHGLPEEVISVLARRVLEGLNYLHGMHIVHRDIKPSNLLVNEKGEVKIADFGVSHVVEGRFEASEFNAGTCAYMSPERVDPGSWGGENADGFAGDVWSLGVVMLECLLGHFPLIGPGQKPDWATLMWAICFGENLELPEKASSEFKNFVRRCLEKDWRKRATATELLDHPFVNRKSCCSSKGLVDYVLHG 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0883 326 Gene3D Phosphorylase Kinase; domain 1 25 122 - -
Glsi09g0883 326 SUPERFAMILY Protein kinase-like (PK-like) 38 309 IPR011009 -
Glsi09g0883 326 FunFam Mitogen-activated protein kinase 2 127 319 - -
Glsi09g0883 326 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Glsi09g0883 326 Pfam Protein kinase domain 39 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0883 326 Gene3D Transferase(Phosphotransferase) domain 1 123 321 - -
Glsi09g0883 326 ProSiteProfiles Protein kinase domain profile. 38 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0883 326 CDD PKc_MAPKK_plant_like 38 309 - -
Glsi09g0883 326 SMART serkin_6 38 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0883 326 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 35 311 - -
Glsi09g0883 326 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0883 Glsi-ChrGlsi09 6080861 6081841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0883 1 311 MAP Kinase Kinase Gene Family AT1G32320 53.583 7.83e-107 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Glsi09g0883 Pkinase 4.1e-63 CL0016