Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0875 ATGTTTTCCAAGACCAAACCTTGCTGCACATTTCGGGCTGGGAATTGCCCCTATATCACAAACTGCAATTTTGCTCACAATAGTGAAGAGCTTTGTCTGCCACCTCCGAATTGGCAAGAAATTGTGGCCGCCCACGAGGAAGAAAAATCCATAATATCGGATCCCAGGGAGGAATTTCAGATTCCATCAATCGAATCGTCAGGATTTGATGGGAAGACGCAGAGGTCGTACAAAGGTCGGCACTGCAAGAAGTTTTACACGGAAGAAGGGTGCCCATATGGAGATAATTGTACATTTCTTCATGACGAGCAATCCAAGAACCGAGAGTGTGGCTATAAGTCTAGGCCCTGGGCAATGTGTCGAGTTGTTAATTCTTCCATCTGTTCTGCTGTATTTGTGCCAAGAGAGGTTTATCCTTACATTGAATATTGCTTTTTTATGTTAGGCATTGCCAATTATATCCGAGTTACCGAGCTTGGACCAGGCAATGATGCATGTGTGACAGGAAAGTGTCTCTCTTGTCGAGTATATTTGATTGTCAAGGGTTGGAGTCACAGGCTGTATTAG 567 0.4427 MFSKTKPCCTFRAGNCPYITNCNFAHNSEELCLPPPNWQEIVAAHEEEKSIISDPREEFQIPSIESSGFDGKTQRSYKGRHCKKFYTEEGCPYGDNCTFLHDEQSKNRECGYKSRPWAMCRVVNSSICSAVFVPREVYPYIEYCFFMLGIANYIRVTELGPGNDACVTGKCLSCRVYLIVKGWSHRLY 188
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0875 188 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 4 27 IPR000571 GO:0046872
Glsi09g0875 188 Gene3D - 1 32 - -
Glsi09g0875 188 Pfam CCCH-type zinc finger 80 102 IPR041367 -
Glsi09g0875 188 SUPERFAMILY CCCH zinc finger 75 104 IPR036855 GO:0046872
Glsi09g0875 188 SMART c3hfinal6 76 103 IPR000571 GO:0046872
Glsi09g0875 188 SMART c3hfinal6 2 28 IPR000571 GO:0046872
Glsi09g0875 188 FunFam Zinc finger, CCCH-type 70 108 - -
Glsi09g0875 188 PANTHER CCCH ZINC FINGER/TIS11-RELATED 2 106 IPR045877 GO:0003729
Glsi09g0875 188 SUPERFAMILY CCCH zinc finger 2 32 IPR036855 GO:0046872
Glsi09g0875 188 ProSiteProfiles Zinc finger C3H1-type profile. 76 104 IPR000571 GO:0046872
Glsi09g0875 188 ProSiteProfiles Zinc finger C3H1-type profile. 2 29 IPR000571 GO:0046872
Glsi09g0875 188 Gene3D - 69 134 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Glsi09g0875 Glsi-ChrGlsi09 6009487 6012123 Dispersed/Transposed
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi09g0875 zf-CCCH 0.0001 CL0537