Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0872 ATGGACGTTGTCGTAGAAGGCGTTGGATCTCCCTGTGGCCTGGTTTCAGCCTTGTGCTTGGCGTTCTGCGAGAATGTGGCGAGTCTGGTTGTCGCTGAAGGCTCGCTTTTAATCTGTAATCTCCAGGATCTTGATCTAGGGTTTGACTCTAGGATTTGGATTCAGTTTTGTGATTGTTTTTGTCATTCCATAACCAAGTTAACGAAGACGGAGGCCTACAGGGAACGACTTCGGAATGAAATGGTGGAAGGGAGAGTTTGTTTGCCCAGGGAAGCTAGAAATGTGTTAGAATTTTTGAAGCATAAAAGGATTCGGCGAGCAAAATCTGTTACTGCCACCGAGACAAGTGTTGCTAATATGATGACCAGAAGTGGAGGAGACGCTTTAAGAGCTTCATCATCATGTGGTATGAGATTGCATGGTCATGCAGATACCTTTTCCAAGCGGAAGGTGGATAAGTTTGACACGAGTGATCTAGAATGGACTGAAAAAATTCCAGAGTGCCCTGTGTATTCCCCAACAAAAGAGGAATTCGAGGATCCTTTGGTTTATCTGCAAAAGATAGCTCCAGAAGCTTCAAAATATGGTATATGCAAGATTATTTCTCCTTTAAGTGCTTCTGTTCCTGCTGGGGTTGTTTTGATGAAGGAGAAAGCAGGATTCAAGTTTGCAACTCGAGTTCAGCCACTTCGCCTTGCTGAGTGGGATACTGAAGACAAAGTCACATTTTTCATGAGTGGAAGAAATTATACATTTCGCGATTTTGAAAAAATGGCGAACAAGGTTTTTGCACGTAGATATTGCAGTGCTGGATGTCTTCCTGCTACATACTTGGAAAAAGAATTTTGGCATGAAATTAGCTGTGGAAAGATGGAAACTGTAGAATATGCATGTGATGTTGATGGTAGTGCTTTTTCATCTTCTCCCACTGATCAGCTTGGGAGCAGCAAATGGAATTTGAAGAAACTTTCACGGTTGCCCAAGTCCATTTTGCGGCTCTTGGAAACAGCAATTCCGGGAGTAACAGAACCCATGCTATATATTGGAATGCTGTTTAGCATGTTTGCCTGGCATGTGGAGGATCATTACTTGTACAGTATTAATTATCATCACTGTGGCGCATCAAAAACTTGGTATGGCATCCCAGGTAATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTGTATTCCAATGATATCCTGTCCAGTGAAGGCGAAGATGGAGCCTTTGATGTTCTCCTGGGGAAAACAACTCTGTTTCCTCCAAATATTTTGTTGGAACATGAAGTCCCTGTCTACAAAGCTGTTCAAAAGCCGGGCGAGTTTATAGTTACCTTCCCTAGAGCATATCATGCTGGTTTTAGTCATGGTTTTAACTGTGGAGAAGCAGTGAATTTTGCCATTGGTGATTGGTTTCCTTTAGGGGCCATTGCTAGCAGGCGGTATGCACGTCTTAACAGGGTTCCTCTGCTGCCTCATGAAGAACTTTTATGCAAAGAAGCAATGCATCTCTATACCAGTTTAGAACTTGAAGATTCAGACTTTCCCTCTGCAGGCCTTATATCTCATAATAGCGTCAAGATCTCTTTTGCTAATCTGATGCGCTTCCAGCATTGTGCTCGCTGGTTCCTAATGAAATTAAGGGTGTGCGCAAATGTCTCTTCACATTCCCATGGCACAATTCTCTGTAGTCTCTGCAAACGTGACTGTTATGTAGCTTATGTTGACTGTGACTGTCACTTGCATCCAGTGTGCCTTCGCCATGATATGGAATCTCTTAACTTCACCTGTGGGAGCAAACATACTCTTTACTTGAGGGAGGATATTGCAGATATGGAAGCTGCAGCCAAGAGGTTCGAGCAGGAAGATGGAATATCTGATGAGATACTTAAGCAGACCAAGGCTGATAAAAACATGTATTCATATCCTTTGTCAAATATGTTTCAGAGAGCTGAGGCAGATGGATATACTCCTTATTGTGAGATAAAATTTGATCATATTATTGAATTTTACACAGGCCCAGATCAGTCAATAAATAATCAAGAGTGTGTTATACAGAGTCAATTTGCTTTGAGACATTGCTCAGAATATCATAAACCCGAAGTGTCTGAGGTTTTTTTTCCTTCTGCTGCATCTACTCTTTGCTCTCTTTCAGATCCTCTTGAGAGCTCTTCTGCTCCTAAGAATGACGAGGCGCATGCTAACTTTAATTCAGGTATTATTGATTCTGAAGATTTTTGTGAAAGAGTGTTATGTGAATCTTCACTGTCCCCTGCTCGGCATCATGAAATGTCGACTAAACCTCATGGTGATCTTCATAGATTAGAGATTAAGCCCATTGTGGATAATGAGAGTGATGATTCCGATTCAGAGATATTTAGGGTAAAGCGGCCTTCTTCTTTGAAGGCACAGAGGAGAAATGTGAATAATGGGATGTCTTCGAAACATTCTGAGTACCAGGGACAAAAACGATTGAAGAGAGTCCTTCATGAAGGAAGTGGGCAACCAATGGATTGCAGCAAAACCAGTGAATGTGGTTACAAATTTAGTGACTCTGCTAATTATAAAGTTGATAGCGAAAGTTCTTTGAGGGACAGATTTCCAAAGGGCAATAGCATTCCTATTTCTATAAGGTATAAAAAGCTAGGAAATGAGGAATTAAGTAGACAACGAGATCACCACAAGAAAGATTGGTTGCAACAGACTATTAGCGCTCCCGTAGAGATTGGACCAAAGCGCCTTAAAGTCCGAGGCCCATCATTTTTGGGCTTAGAGAGCAGATCGAATTGA 2796 0.4192 MDVVVEGVGSPCGLVSALCLAFCENVASLVVAEGSLLICNLQDLDLGFDSRIWIQFCDCFCHSITKLTKTEAYRERLRNEMVEGRVCLPREARNVLEFLKHKRIRRAKSVTATETSVANMMTRSGGDALRASSSCGMRLHGHADTFSKRKVDKFDTSDLEWTEKIPECPVYSPTKEEFEDPLVYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFATRVQPLRLAEWDTEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPATYLEKEFWHEISCGKMETVEYACDVDGSAFSSSPTDQLGSSKWNLKKLSRLPKSILRLLETAIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGNAALEFERVVREHVYSNDILSSEGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIVTFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYARLNRVPLLPHEELLCKEAMHLYTSLELEDSDFPSAGLISHNSVKISFANLMRFQHCARWFLMKLRVCANVSSHSHGTILCSLCKRDCYVAYVDCDCHLHPVCLRHDMESLNFTCGSKHTLYLREDIADMEAAAKRFEQEDGISDEILKQTKADKNMYSYPLSNMFQRAEADGYTPYCEIKFDHIIEFYTGPDQSINNQECVIQSQFALRHCSEYHKPEVSEVFFPSAASTLCSLSDPLESSSAPKNDEAHANFNSGIIDSEDFCERVLCESSLSPARHHEMSTKPHGDLHRLEIKPIVDNESDDSDSEIFRVKRPSSLKAQRRNVNNGMSSKHSEYQGQKRLKRVLHEGSGQPMDCSKTSECGYKFSDSANYKVDSESSLRDRFPKGNSIPISIRYKKLGNEELSRQRDHHKKDWLQQTISAPVEIGPKRLKVRGPSFLGLESRSN 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0872 931 Pfam jmjN domain 169 201 IPR003349 -
Glsi09g0872 931 ProSiteProfiles JmjN domain profile. 168 209 IPR003349 -
Glsi09g0872 931 ProSiteProfiles JmjC domain profile. 315 485 IPR003347 -
Glsi09g0872 931 PANTHER LYSINE-SPECIFIC DEMETHYLASE 160 841 - -
Glsi09g0872 931 Pfam C5HC2 zinc finger 565 616 IPR004198 -
Glsi09g0872 931 FunFam Lysine-specific demethylase isoform A 163 512 - -
Glsi09g0872 931 SMART cupin_9 315 485 IPR003347 -
Glsi09g0872 931 Gene3D Cupin 168 521 - -
Glsi09g0872 931 SMART JmjN_1 167 208 IPR003349 -
Glsi09g0872 931 Pfam JmjC domain, hydroxylase 345 468 IPR003347 -
Glsi09g0872 931 SUPERFAMILY Clavaminate synthase-like 246 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0872 Glsi-ChrGlsi09 5982134 5989433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0872 165 516 JUMONJI Transcription Factor Family AT2G34880 37.226 4.45e-64 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Glsi09g0872 JmjC 6.9e-39 CL0029