Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0858 ATGGATAAAACCCCAAAAGAGAAGGAGTCAAAGACACCTCCTGCTACATCACAGGAGCAGTCTTCGACCACCAACACTGGAACAATAAATCCTGACTGGTCCAGCTTTCAGGCATATTCTCCTATACCTCCACCTGGGTTCTTGGCATCAAGTCCCCAAGCCCACCCATATATGTGGGGTGTCCAGCATATTATGCCTCCCTATGGTACCCCACCACATCCCTATGTTGCAATGTATCCCCATGGTGGGATATATGCTCATCCATCCATACCTCCGGGATCTTATCCTTTTAGTCCTTTTGCCATGCCTCCTTCAAATGGGATTGCTGAGGCAACAGGAAATACTCCTGGCAGCATGGAAGCTGATGCTAAGCCTCCTGAGGTGAAGGAAAAATTGCCAATCAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAATATGATCACAGGGAAGAACAATGAACTTGGTAAAACACCAGGGACATCTGCTAATGGAATTCATTCAAAAAGTGGTGAGAGTGCAAGTGAAGGAACAAGTGAAGGAAGTGATGCAAATTCTCAGAATGATTCTGAGTTGAAATCAGGGGGCAGGCAGGATTCTTTGGAAGCTGAACCATCTCAAAATGGAAGTTCGGTGCATGCTCCTCAAAATGGGAGACTTAATACACATCATGCAGTGGTTAACCAAACAATGGCTGTCATGCCTATGTCAGCTACTGGTGCTCCTGGAGCAGTTCCTGGTCCCACAACAAACTTAAATATAGGAATGGATTATTGGGGTGCTCCAACTTCGTCCACTATTCCTGCACTGCGTGGAAAGGTTCCATCTACTGCAGTTGCTGGGGGGATGGTTACTCCTGGATCACGGGATAGTGTTCAGTCACAACTTTGGCTACAGGACGAAAGAGAACTTAAAAGACAAAGGCGGAAGCAGTCTAATAGGGAATCTGCCCGCAGATCCAGGTTGCGCAAGCAGGCTGAATGTGATGAACTAGCCCAGCGTGCTGAGGCTTTGAAAGAAGAAAATGCTTCTCTTCGGTCAGAAGTGAATCGGATCAGGAGTGAGTATGAGCAGTTGCTCTCAGAGAATGCTGCCCTCAAGGAGAGACTTGGGGAACTACCTGGAAATGAAGATCTTAGGTCTGACCAGAATGATCAACATGTGGGTAACGAAGCTCAAGAGACTGGGCAGAAAGAGACTGTGCAGGGTGGTCATTAG 1215 0.47 MDKTPKEKESKTPPATSQEQSSTTNTGTINPDWSSFQAYSPIPPPGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPHGGIYAHPSIPPGSYPFSPFAMPPSNGIAEATGNTPGSMEADAKPPEVKEKLPIKRSKGSLGSLNMITGKNNELGKTPGTSANGIHSKSGESASEGTSEGSDANSQNDSELKSGGRQDSLEAEPSQNGSSVHAPQNGRLNTHHAVVNQTMAVMPMSATGAPGAVPGPTTNLNIGMDYWGAPTSSTIPALRGKVPSTAVAGGMVTPGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVNRIRSEYEQLLSENAALKERLGELPGNEDLRSDQNDQHVGNEAQETGQKETVQGGH 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0858 404 Gene3D - 303 357 - -
Glsi09g0858 404 Pfam Disordered region downstream of MFMR 130 267 - -
Glsi09g0858 404 MobiDBLite consensus disorder prediction 366 404 - -
Glsi09g0858 404 MobiDBLite consensus disorder prediction 141 218 - -
Glsi09g0858 404 SUPERFAMILY Leucine zipper domain 303 359 IPR046347 GO:0003700|GO:0006355
Glsi09g0858 404 MobiDBLite consensus disorder prediction 1 44 - -
Glsi09g0858 404 Pfam bZIP transcription factor 300 362 IPR004827 GO:0003700|GO:0006355
Glsi09g0858 404 Coils Coil 320 368 - -
Glsi09g0858 404 PANTHER G-BOX-BINDING FACTOR 3-RELATED 9 393 IPR044827 GO:0003700|GO:0006355|GO:0043565
Glsi09g0858 404 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 302 365 IPR004827 GO:0003700|GO:0006355
Glsi09g0858 404 Pfam G-box binding protein MFMR 5 91 IPR012900 -
Glsi09g0858 404 SMART brlzneu 300 364 IPR004827 GO:0003700|GO:0006355
Glsi09g0858 404 MobiDBLite consensus disorder prediction 14 37 - -
Glsi09g0858 404 MobiDBLite consensus disorder prediction 387 404 - -
Glsi09g0858 404 CDD bZIP_plant_GBF1 305 355 IPR045314 GO:0003700|GO:0006355
Glsi09g0858 404 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 307 322 IPR004827 GO:0003700|GO:0006355
Glsi09g0858 404 MobiDBLite consensus disorder prediction 301 324 - -
Glsi09g0858 404 MobiDBLite consensus disorder prediction 370 386 - -
Glsi09g0858 404 MobiDBLite consensus disorder prediction 111 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0858 Glsi-ChrGlsi09 5872626 5880823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0858 1 385 bZIP Transcription Factor Family AT2G35530 65.394 2.96e-170 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Glsi09g0858 MFMR_assoc 7.3e-62 No_clan