Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0856 ATGGGTTACGAAAACGATATGTATCGGGACGAGGATGGAGAGCCATTGATGGACTACGATGACGTACAATCCGATCGCGAGCTGTCTCCCGAACCCCATCAGCAAGGACTGCTCGACGATTTGGAGGAAGACGTCGATGATTGGCGTGGGCGAGAACGGTCGCAGACTCCAGTCTACGATAACGATCCGTCCGTGTTAAAGTCGAAGCCAAGGAAGAGGCTTATCAAGAAAAGTGACACTGGGAGACCGTCTGTGGCCCCTGAACTTGTTGATGATGAGGAGGATGAAAATATTCCGGCGAGTTTCGTCAGGGACGGGTCTGAGGAGAGGGAAGGAAGAAAGAGAAAGGGGAAGGATGTTAGCAGTGGGAAGAAGGACAAGAGGCATAAGGGGGAGAAGAAGTTTGGGAGTAGTGGTAAGGGCGGCTCCAAATTTGGGTTACCGAAGAAAGGGTTTGCTGGTAAAGCAGGGAAGGATCATGATGGCGATGTCAAGGAGATGTGGGAGACAATTGCTGGTGGCGACTCAGAGGAGGATCAAGAGGGTGTCAGAACGGTGGATGATGATAACTTCATAGATGACACTGGAGTGGAGCCTGCTTTATATGGTAGTGACAATGAACCTCGTTCTCCTCGTGAATATCCGCAGGCAGAGGAAGGTGAAGAGGATGATGAGATTAAGGAGCTTTTCAAGATGGGTAAGAAGAAGAAGAAGAATGAGAGAAGTCCTGCAGAGATAGCCTTGCTAGTGGAGAATGTCATGGCTGAACTCGAGGTTACAGCTGAAGAGGATGCTGAACTTAATAGGCAGGGGAAGCCTGCGATCAATAAACTCAAGAAGTTGCCTCTTTTAACAGAAGTCCTCTCAAAGAAACAACTTCAACAAGAGTTTTTAGATCATGGAGTTCTAACTTTATTGAAGAATTGGCTTGAACCCCTCCCAGATGGAAGCTTACCCAATATAAACATCCGCACTGCAATTTTGAATATTTTGAATGATTTTCCTATAGACCTTGAGCAGTATGACAGAAGAGAACAGCTGAAGAAGAGCGGTCTTGGAAAGGTGATTATGTTTTTATCAAAATCCGATGAAGAAATCAGTGTAAATAGAAAACTAGCTAGGGAGCTGGTTGATAAATGGAGCCGACCTATATTTAACAAGAGTACAAGGTTTGAAGACATGAGAAATATTGATGATGACAGGGTTCCTTTTAGAAGGCCATCAGTTAAAAAGCCAGCAAATAAAGCTTCAGGAATGGAATCTAGAGATGGTGATCTTGATTTGGAATTTTCACAGCGTAAGTCTGGACAGTCCTCTTCCAGGCAGCTCACATCAAGGCCAGAAGCAACACCATTGGATTTTGTGGTGCGTCCCCCATCTAAAATTGACCCAGAAGAAATTAGAGCCCGTGCAAAACAAGCTGCACAAGATCAGTCACGCATGAAGATGAATAAGAAGCTACAGCAGTTGAGGGCACCGAAAAAGAGGCAGCTTCAAGCCACAAAATTGAGTGTGGAAGGTCGGGGTATGATCAAGTATTTGTAA 1545 0.455 MGYENDMYRDEDGEPLMDYDDVQSDRELSPEPHQQGLLDDLEEDVDDWRGRERSQTPVYDNDPSVLKSKPRKRLIKKSDTGRPSVAPELVDDEEDENIPASFVRDGSEEREGRKRKGKDVSSGKKDKRHKGEKKFGSSGKGGSKFGLPKKGFAGKAGKDHDGDVKEMWETIAGGDSEEDQEGVRTVDDDNFIDDTGVEPALYGSDNEPRSPREYPQAEEGEEDDEIKELFKMGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLPLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILNILNDFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEEISVNRKLARELVDKWSRPIFNKSTRFEDMRNIDDDRVPFRRPSVKKPANKASGMESRDGDLDLEFSQRKSGQSSSRQLTSRPEATPLDFVVRPPSKIDPEEIRARAKQAAQDQSRMKMNKKLQQLRAPKKRQLQATKLSVEGRGMIKYL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0856 514 Coils Coil 250 270 - -
Glsi09g0856 514 PANTHER PROTEIN IWS1 HOMOLOG 1 1 514 IPR044204 GO:0009742|GO:0032784
Glsi09g0856 514 MobiDBLite consensus disorder prediction 153 191 - -
Glsi09g0856 514 MobiDBLite consensus disorder prediction 431 447 - -
Glsi09g0856 514 MobiDBLite consensus disorder prediction 402 458 - -
Glsi09g0856 514 MobiDBLite consensus disorder prediction 19 56 - -
Glsi09g0856 514 ProSiteProfiles TFIIS N-terminal domain profile. 304 387 IPR017923 -
Glsi09g0856 514 Pfam TFIIS helical bundle-like domain 330 384 IPR017923 -
Glsi09g0856 514 MobiDBLite consensus disorder prediction 1 224 - -
Glsi09g0856 514 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 243 390 IPR035441 -
Glsi09g0856 514 MobiDBLite consensus disorder prediction 416 430 - -
Glsi09g0856 514 MobiDBLite consensus disorder prediction 97 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0856 Glsi-ChrGlsi09 5865313 5870149 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Glsi09g0856 Med26 5.7e-13 No_clan