Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0841 ATGTGGCAGATACCGCTTTGGCTAGTAGAGGGTACAAAAACCCCTGGCTTTAGCGGCGGGACTTTTGGCACTGGTTCGCGCTGTTTTGTGGATCGCGGGAGTTCAGTTCCAACTTCAACCATGGGTAAGAAACAAGACGACACCGCCATCCTCAGCGAGCCAGTAGCCGAAAAAGCCCTCAACTGCAACGGAGTCAAAGCAGAGAAGAAGAAAAAGAAGAAGAGAGATAAGCAAAACGAAGCTAGTCCCAAAAGAAAACTTGAGGAATTGGAGCTTCGAGATGGCACCGAACCGAAAAGGAAGAAGAATAAGAAGGACAAGAAGTCGGAGGAAACCGAAACCGTCGAAAGAAATGACGCCGTGAATGGTGAAGATGATGAATCGGTGAGAGATGAGCTTGTGGTAGTTACTGGGAAGAATATCAAAATCGAAAAATATGCGCCCGCCAAAACTTTTGCCGCATCAGGGCTTCCAGAGAAAGTTTTGGAGTGCTGCAAGAGTTTTGAAAAGCCATCCCCTATTCAGTCCCGAGCGTGGCCTTTCTTGTTGGACGGTCGTGATTTAATTGGCATTGCGGCGACTGGATCAGGAAAGACACTGGCTTTTGGAATACCGGCGATTATGCATGTTTTGAGCAAGCGTAAGTGTAAAGTACCAAAGGGTCGGAATCCTCTCTGCCTTGTGCTCTCTCCCACGAGGGAACTCGCTCAACAAATTTCAGATGTTATGTGTGATGCTGGGAAGTCTTGTGGTGTGGAATCTATTTGTTTGTATGGTGGAACCTCCAAAGGGCCGCAAATATCTTCCTTAAAATCTGGCATTGACATTATCATTGGAACCCCTGGTCGTATAAAGGATCTGATTGAAATGGGTTTTTGTTGCCTACAAGAAGTTTCATTTGTGGTTCTTGATGAAGCAGATCGAATGCTTGACATGGGATTTGAACAAGCTGTTCGCTCAATACTGGGTCAGACGTGTTCTGTTCGTCAAATGGTTATGTTCAGTGCTACATGGCCTCTACCAGTCCACCAATTAGCTCAGGAGTTTATGGATCCTAACCCTGTGAAAGTTGTTGTAGGATCAGAGGATTTAGCTGCCAATCATGATGTGATGCAGATAGTTGAGGTCTTAGATGATCGTACACGCGATAAACGCCTGGTTGCTCTGCTAGAAAAGTACCACAAGTCTCAGAGGAATCGAGTATTAGTTTTTGTCTTATACAAAATGGAAGCCGCACGAGTTGAAAATATGCTTCAACAAGGGGGTTGGAAGGTTGTCTCAATACATGGGGACAAAGCACAATATGAACGTACAAAAGCACTATCATTATTCAAGAAGGGAAGCTGCCCTTTGATGATTGCTACTGATGTAGCTGCTCGGGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTATAGTTTTCCTCTAACTACAGAAGATTATGTTCATAGAATTGGGCGTACAGGACGAGCGGGTAAGAAAGGTGTTTCCCATACATTCTTCACACAGCAGAATAAGGGGCTTGCTGGGGAGCTAGTGAATGTTCTTAGAGAAGCTGGGCAAATTGTGCCAGATGCTCTTTTGAAATTTGGCACTCATGTAAAGAAAAAGGAGTCCAAGCTTTATGGGGCTCACTTCAAGGAGATTTCTGTTGATGCTCCAAAGTCTCAAAAAATCACATTTGACAACTCTGACGATGAAGATTAA 1710 0.4456 MWQIPLWLVEGTKTPGFSGGTFGTGSRCFVDRGSSVPTSTMGKKQDDTAILSEPVAEKALNCNGVKAEKKKKKKRDKQNEASPKRKLEELELRDGTEPKRKKNKKDKKSEETETVERNDAVNGEDDESVRDELVVVTGKNIKIEKYAPAKTFAASGLPEKVLECCKSFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAIMHVLSKRKCKVPKGRNPLCLVLSPTRELAQQISDVMCDAGKSCGVESICLYGGTSKGPQISSLKSGIDIIIGTPGRIKDLIEMGFCCLQEVSFVVLDEADRMLDMGFEQAVRSILGQTCSVRQMVMFSATWPLPVHQLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRTRDKRLVALLEKYHKSQRNRVLVFVLYKMEAARVENMLQQGGWKVVSIHGDKAQYERTKALSLFKKGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTQQNKGLAGELVNVLREAGQIVPDALLKFGTHVKKKESKLYGAHFKEISVDAPKSQKITFDNSDDED 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0841 569 Pfam Helicase conserved C-terminal domain 384 493 IPR001650 -
Glsi09g0841 569 SMART helicmild6 412 493 IPR001650 -
Glsi09g0841 569 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 381 532 IPR001650 -
Glsi09g0841 569 SMART ultradead3 167 373 IPR014001 -
Glsi09g0841 569 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 302 310 IPR000629 -
Glsi09g0841 569 Gene3D - 92 359 IPR027417 -
Glsi09g0841 569 FunFam ATP-dependent RNA helicase RhlB 359 536 - -
Glsi09g0841 569 Gene3D - 360 535 IPR027417 -
Glsi09g0841 569 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 179 356 IPR014001 -
Glsi09g0841 569 Pfam DEAD/DEAH box helicase 173 342 IPR011545 GO:0003676|GO:0005524
Glsi09g0841 569 CDD SF2_C_DEAD 370 502 - -
Glsi09g0841 569 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 506 IPR027417 -
Glsi09g0841 569 MobiDBLite consensus disorder prediction 33 126 - -
Glsi09g0841 569 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 150 176 IPR014014 GO:0003724
Glsi09g0841 569 CDD DEADc 168 357 - -
Glsi09g0841 569 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 101 528 - -
Glsi09g0841 569 MobiDBLite consensus disorder prediction 80 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0841 Glsi-ChrGlsi09 5795299 5804991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0841 131 501 Eukaryotic Initiation Factors Gene Family AT3G19760 32.533 5.85e-54 186