Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0832 ATGGCGACCAAGTGCCTGACATTAAGAGCTTCAGCTAAAACCCTCTTCCAACTTCTTCAACCTTCTGTTCAAGATTGTCGCCCTGTGTCTCAATTCCTCAGAAGCATGCATTCATTCGCTTCCCGGGAATTTGATGCTCGTAATTTTCAGAAGTCCTATCCCGGAGGCTGTAGGGGCATGGTCTGTGCCCCAAATTACAATCTCGATGAAGCTGGTGCTGCTGCTCTTGCCCTTGATAATCGTGTTCCGGCTACTGTGATAACCGGTTTTCTTGGTTCTGGAAAGACGACTCTCCTAAATCATATTCTAACATCCCAACATGGGAAGCGGATAGCTGTCATCGAAAATGAGTTTGGTGAGGTGGATATTGATGGTTCATTGGTTGCTAGTCATTCTTCCGTGAGTGAAGACATTGTCATGGTTAATAATGGCTGCCTATGTTGCACTGTGCGAGGAGATCTAGTTAAAATGCTGTTGGAGTTGGCTAGAAAAAAACGAGACAAGTTTGATCATATTGTTATAGAAACCACAGGCCTTGCCAAGCCAGCTCCTGTTATTGAAACATTTTGCAGTGATGAACTAGTTTCTCAGTATGTGAAATTGGATGGAGTTGTGACTTTGGTTGACTCCAAACATGCCATGCAGCATTTAAACGAAGTGAAACCAAGATTTGTGGTTAATGAGGCAGTGGAACAAGTTGCATATGCTGACCGTATTATCTTGAACAAGATAGATTTGGTGACGGAGTCTGAGTTGGAAGCATTGACTAAGAAAATTAAGCACATTAATGGGATGGCACAAATTAAGCAAGCTAAATTTGGTTCTGTTGACATGGACTTTGTTTTGGGTGTGGGAGGATATGATCTTGAGAGAATTGAGTCTGAAGTTCATGGAGATTGTTCCTCTTCTTCAAGCCATCAACATGAGTCTGGACGTGAGCACAAAGGGCATCATCATCATGACCACGTGCATGATTCTGCAGTCTCCAGTGTCAGCATTGTTGCTGAAGGAACTCTTGATCTTGATGAGCTTGATGATTGGCTTGAGAGATTAGTTGAAGAAAAAGGAGAGGATCTATACAGAATGAAAGGTGTCTTGTCAGTGGATGGTTCTGATCAAAGATATGTGTTGCAGGGAGTGCATTCCATGTTGGATGGGTGTCCAGGAAAAACATGGGGACCTGAGGAGAAGAGGATAAACAAGCTTGTGTTCATAGGAAGGAATCTGGATGAAACTGCTCTTAGAAAAGGCTTCAAAGGAATTGCAGGTTTTCACGGGCTGGAACACTTGAGAATTGAGATGCAGCTCCCACCTCCCAGCCTCAGTCGCACTGGGAGGAATACTGTGCTGTCACGGGCAAACGTAGGGCCCACCAACCTCAACCCCGGTCCATATCCAACGGTGGATAAATGTAGCGGAGAACAGAGTCTACTTGTGGGATTCTTTTTTGTTTTTCTGAAAGTTGGATTCTCTGGGAATACTGCTTCTGTCACTCCCAGAGGGATATCTTGTGGCCTACACACTTCTCCTTTTGATCACTTCTTCTCTTCTTTATGAGGAGGAGGTTATCCGTACGAGAATGGGGTGGTGATGACAAGAGACCCTAAGCCGAGGCTGAGGTGGACGGCTGATCTTCACGATCGCTTCGTGGACGCCGTCACCAAGCTTGGTGGCCCCGACAAAGCGACTCCCAAATCTGTATTGAGGCTAATGGGCTTGAAAGGTTTGACATTGTATCATTTGAAGAGTCATTTACAGAAGTATAGACTTGGACAGCAGGTTCGTAAACAAAACACTGAAGAACAACACAGAGACAACAATAATAGCCGTTCATATGTACATTTCAGTAATCGTTCTCCAGGACCTAACACCAATTGCAGAGGCGATAACCAAACCGAGGAAATCCCAATAGCAGAGGCACTGAGGCATCAGATAGAAGTTCAAAAGAGATTGGAAGAGCAGCTCGAGGTACAGAAGAAATTGCAGATGAGAATAGAGGCTCAAGGGAAGTATTTGCAAACCATGTTGGAGAAAGCCCAGAAGAGCCTTTCCCCGGATGCGAATGGACCAAGCAACCTAGAAGAAGCAAGAGCTCAATTGACAGACTTCAATTCTGCTTTGTCGAATTTCATGGAGAATATGAACAAAGACAGCAAAGAAAACATATTAGACATGAATGATTTCTACAGGAAGACCCATGATTCGACTTTCCAAATTTTTCAAGGAGAGAGAGAAGATAATAAAGATCAAAAGCCTAAGGTTGAAGACGGTTCAATACAGTTTGACTTAAACATCAAAGGTAGCCATGACCTTGTATCAGCAGGTGGAGCTGAAATGGAATCCAAGATCCTTTCATACAGATTATAA 2367 0.4385 MATKCLTLRASAKTLFQLLQPSVQDCRPVSQFLRSMHSFASREFDARNFQKSYPGGCRGMVCAPNYNLDEAGAAALALDNRVPATVITGFLGSGKTTLLNHILTSQHGKRIAVIENEFGEVDIDGSLVASHSSVSEDIVMVNNGCLCCTVRGDLVKMLLELARKKRDKFDHIVIETTGLAKPAPVIETFCSDELVSQYVKLDGVVTLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTESELEALTKKIKHINGMAQIKQAKFGSVDMDFVLGVGGYDLERIESEVHGDCSSSSSHQHESGREHKGHHHHDHVHDSAVSSVSIVAEGTLDLDELDDWLERLVEEKGEDLYRMKGVLSVDGSDQRYVLQGVHSMLDGCPGKTWGPEEKRINKLVFIGRNLDETALRKGFKGIAGFHGLEHLRIEMQLPPPSLSRTGRNTVLSRANVGPTNLNPGPYPTVDKCSGEQSLLVGFFFVFLKVGFSGNTASVTPRGISCGLHTSPFDHFFSSLXGGGYPYENGVVMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQVRKQNTEEQHRDNNNSRSYVHFSNRSPGPNTNCRGDNQTEEIPIAEALRHQIEVQKRLEEQLEVQKKLQMRIEAQGKYLQTMLEKAQKSLSPDANGPSNLEEARAQLTDFNSALSNFMENMNKDSKENILDMNDFYRKTHDSTFQIFQGEREDNKDQKPKVEDGSIQFDLNIKGSHDLVSAGGAEMESKILSYRL 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0832 788 SUPERFAMILY Homeodomain-like 536 592 IPR009057 -
Glsi09g0832 788 SMART CobW_C_3 328 422 IPR011629 -
Glsi09g0832 788 NCBIfam myb-like DNA-binding domain, SHAQKYF class 536 591 IPR006447 GO:0003677
Glsi09g0832 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 292 IPR027417 -
Glsi09g0832 788 CDD CobW-like 83 285 - -
Glsi09g0832 788 MobiDBLite consensus disorder prediction 609 631 - -
Glsi09g0832 788 Pfam MYB-CC type transfactor, LHEQLE motif 636 682 IPR025756 -
Glsi09g0832 788 Gene3D - 535 593 - -
Glsi09g0832 788 MobiDBLite consensus disorder prediction 298 323 - -
Glsi09g0832 788 Coils Coil 693 713 - -
Glsi09g0832 788 MobiDBLite consensus disorder prediction 594 634 - -
Glsi09g0832 788 Pfam Cobalamin synthesis protein cobW C-terminal domain 328 420 IPR011629 -
Glsi09g0832 788 PANTHER COBW-RELATED 78 420 - -
Glsi09g0832 788 FunFam GTP-binding protein YjiA 79 288 - -
Glsi09g0832 788 Gene3D - 308 421 IPR036627 -
Glsi09g0832 788 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 533 593 IPR017930 -
Glsi09g0832 788 Pfam CobW/HypB/UreG, nucleotide-binding domain 83 268 IPR003495 -
Glsi09g0832 788 MobiDBLite consensus disorder prediction 306 323 - -
Glsi09g0832 788 FunFam Myb family transcription factor 535 593 - -
Glsi09g0832 788 MobiDBLite consensus disorder prediction 594 608 - -
Glsi09g0832 788 SUPERFAMILY Hypothetical protein YjiA, C-terminal domain 328 420 - -
Glsi09g0832 788 Coils Coil 638 668 - -
Glsi09g0832 788 Pfam Myb-like DNA-binding domain 539 589 IPR001005 -
Glsi09g0832 788 Gene3D - 79 287 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0832 Glsi-ChrGlsi09 5714743 5722743 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0832 520 703 G2-like Transcription Factor Family AT4G13640 53.158 3.36e-57 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Glsi09g0832 cobW 2.2e-56 CL0023