LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi09g0817	ATGGAGAGATATGAATTAATCAAGGAAGTTGGTGATGGAACATTTGGGACTGTCTGGAGAGCTATTAATAAGCAAACTAGTGAAGTTGTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTAAATCTCCGAGAAGTCAAGTCATTGCGGAAAATGAATCACCCAAATATTGTCAAGTTGAAGGAAGTTATTCGAGAAAGTGACATTCTGTTCTTTGTTTTTGAATACATGGAATGCAACCTATACCAACTCATGAAAGACAGGGGAAAGTTGTTTTCTGAAGGTGAGGTTAGAAATTGGTGTTTTCAAGTTTTTCAAGGTCTTGCTTACATGCACCAGCGCGGATACTTTCATCGTGACCTGAAGCCAGAAAACTTGCTGGTTACCAAGGATGTCATCAAAATTGCTGATTTTGGTCTTGCCCGTGAGATTAGCTCGCAACCACCCTACACTGAGTATGTCTCCACACGGTGGTATCGTGCACCTGAAGTGCTGCTTCAGTCTTACTTGTATGGCTCCAAAGTTGACATGTGGGCAATGGGTGCTATAATTGCTGAATTGCTCACTCTCCGTCCTCTTTTTCCAGGTGTCAATGAAGCAGATGAGATCTACAAAATATGTAATGTGATAGGCAGTCCAACGATTGAATCATGGGCTGATGGACTTAAACTTGCAAGGGATATTAACTATCAGTTTCCACAGCTTGCTGGTGTACATCTGTCTGTACTGATCCCATCTGTGAGCCTTGATGCAATCAACCTTATTACATCACTTTGCTCATGGGATCCTTGCAAGAGGCCAACAGCTGCAGAGGCCCTCCAACATCCTTTCTTCCAGAGTTGCTTTTACATTCCTCCATCCCTTCGCACCAAAGCAGTAGCCAGAACTCCTCCATCTGCTGGAACAAGGGGAGCATTGGATCGACAAGGGGTGAAGAGATATTCTGGCACTTTGTCTAATTCAAAGCTCACCAATAATTATTCTTCCCCAAAGTTACATCCTCCTTTAGCTGCAGGTGTACATCGCAAGTTGGATATGGGCATGGCAAGTGAGGATGGAAATAAGACTGATAAGTCCTTGAAGAATACCCAACAACTGAAATATCGACCACCTGTAAAGGACAGCCCAACTTCTGTAATCAATGGAAGGACTAATGCACGTGGGGTTTCAGATACAGCTGAGAAGTTGGCTAATATGGCAGTCAGTACTCGAAGACTGTCCATGGGCCAACCGACTCCACCTCCAATGAAGGCCGGAGTCCATTGGATTTCTGAAACTGGAAACTTCCTGCTCAGGCCTGCACAAGAGATTCCAACTGGAAGAACTTACTCAAGAAAAGTTGCTGGATGA	1365	0.4359	MERYELIKEVGDGTFGTVWRAINKQTSEVVAIKKMKKKYYSWEECVNLREVKSLRKMNHPNIVKLKEVIRESDILFFVFEYMECNLYQLMKDRGKLFSEGEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVTKDVIKIADFGLAREISSQPPYTEYVSTRWYRAPEVLLQSYLYGSKVDMWAMGAIIAELLTLRPLFPGVNEADEIYKICNVIGSPTIESWADGLKLARDINYQFPQLAGVHLSVLIPSVSLDAINLITSLCSWDPCKRPTAAEALQHPFFQSCFYIPPSLRTKAVARTPPSAGTRGALDRQGVKRYSGTLSNSKLTNNYSSPKLHPPLAAGVHRKLDMGMASEDGNKTDKSLKNTQQLKYRPPVKDSPTSVINGRTNARGVSDTAEKLANMAVSTRRLSMGQPTPPPMKAGVHWISETGNFLLRPAQEIPTGRTYSRKVAG	454

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi09g0817	454	Gene3D	Transferase(Phosphotransferase) domain 1	84	289	-	-
	Glsi09g0817	454	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE	3	332	-	-
	Glsi09g0817	454	Pfam	Protein kinase domain	4	283	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi09g0817	454	SMART	serkin_6	4	283	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi09g0817	454	ProSitePatterns	Protein kinases ATP-binding region signature.	10	34	IPR017441	GO:0005524
	Glsi09g0817	454	FunFam	serine/threonine-protein kinase MAK isoform X1	84	293	-	-
	Glsi09g0817	454	Gene3D	Phosphorylase Kinase; domain 1	1	83	-	-
	Glsi09g0817	454	FunFam	cyclin-dependent kinase F-4-like	1	83	-	-
	Glsi09g0817	454	CDD	STKc_MAK_like	4	283	-	-
	Glsi09g0817	454	SUPERFAMILY	Protein kinase-like (PK-like)	1	287	IPR011009	-
	Glsi09g0817	454	ProSiteProfiles	Protein kinase domain profile.	4	283	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi09g0817	454	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	121	133	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi09g0817	Glsi-ChrGlsi09	5611206	5615300	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi09g0817	1	290	Core Cell Cycle Gene Families	AT3G48750	36.913	5.30e-67	214

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_RCK	Glsi09g0817		Pkinase	2.4e-75	CL0016