Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0805 ATGGTTAAGCATAATAATGTTATCCCTAGTGGGCACTTCCGGAAGCACTGGCAAAACTATGTGAAGACTTGGTTCAATCAACCAGCACGGAAGACAAGAAGACGGTTAGCTCGGCAAAAGAAAGCTGTTAAGATTTTCCCTAGGCCTACAGCTGGACCTCTTAGACCTATTGTTCATGGTCAAACTTTGAAATACAACATGAAAGTCAGAGCTGGCAGAGGATTTTCTCTTGAAGAACTCAAGGCTGCTGGTATTCCCAAAAAGCTTGCTCCAACCATTGGCATTGCTATTGATCATCGCCGCAGGAACCGTTCTTTGGAAAGTCTCCAAGCTAATGTCCAGAGGCTAAAAACATACAAGGCCAAGCTGGTTGTGTTCCCAAGACGTGCACGCAAGGTCAAGGCTGGTGATTCTACGCCTGAGGAACTTGCAAATGCAACTCAAGTTCAGGGCTCATACCAGCCCATTGTGAGGGAGAAGCCTTCTGTAGAGCTTGTTAAGGTTACAGATGATATGAAGGCATTTAAGGCTTATAACAAGCTTCGCCTTGAACGCACAAACAAACGTCATGTTGGTGCCAGGCTGAAGCGGGCTGCTGAAGCAGAAAAGGAGGAAAAGAAGTGA 624 0.4599 MVKHNNVIPSGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAIDHRRRNRSLESLQANVQRLKTYKAKLVVFPRRARKVKAGDSTPEELANATQVQGSYQPIVREKPSVELVKVTDDMKAFKAYNKLRLERTNKRHVGARLKRAAEAEKEEKK 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0805 207 Gene3D - 167 207 - -
Glsi09g0805 207 FunFam 60S ribosomal protein L13 166 207 - -
Glsi09g0805 207 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Glsi09g0805 207 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
Glsi09g0805 207 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Glsi09g0805 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 IPR001380 GO:0003735|GO:0005840|GO:0006412
Glsi09g0805 207 Coils Coil 196 207 - -
Glsi09g0805 207 MobiDBLite consensus disorder prediction 187 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0805 Glsi-ChrGlsi09 5552149 5553657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0805 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 85.864 5.88e-127 355