Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0802 ATGCATGGTAAAGACGCGATTTTTGTACAGCCACCGGCACAGAAGGCGTACGAGGAAGATACAAAAAGGGTCTGTCTACAAAGCATGGGGTACGATTCGGATAGCCCCTCGCAAGATGGGAGGGATGAAGATGATGAAGAAGAATATGAGGAGGCTGGCAAGGACGACCGTTTACTGGGGTTCATGTTTGGAAATGTTGATAATTCTGGGGATCTCGATGTTGATTACCTTGATGAGGATGCAAAGGAGCATCTTTCTGCACTGGCTGACAAACTGGGTCCGTCACTGACAGATATAGATTTGTCAGGAAAATCACCACAAACATCAGCTGATGTAGTCGAACAAGACTATGGTGAGAAAGCTGAAGATGCAGTTGATTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGACTGAAGCTGCAAATGAAGAGGACTATTTAGTGCCGAAAAAAGAATTTTTTTCTGTTGAAGCCTCTCTTGAAGCTTTCAAATCCAGAGCTTCTGTCTTTGACGATGAAAATTATGATGAGGAATCTGAAAAGGAACAAGACTTGGTGAATAACAATTCTGAAGTTGATAACATCTCTATAACTGGAGAGCAGGTAGAGAGTCTTGCAGACACATCTAAAGGACAGAGAACTCCAGAAGTTGATTCACAGGTTGTCTCACTGCAGACTGAAGAATCGGATGGTGATGTACAAAAACTACAGGATTATAAAACTATCATGGTTAACTTTCTATTCATCTATGGAATGGTCATTTTAAGGTTCTCTGAAATTTTTGGTATACATGAACCTTTGAGAAAGGGAGGGAAGAGAGAACATCGACCTTCTATTCCTAGAGATAGATACAAGTCTTTGAATTTATCTGATATTGTAGAAGAGGATGAAGAGGCATTCCTTCGGGGCTCCTCTCAGAATCTCGTACTTAACAAACAGGCATTTGTAGTCCAAAATGGTATATCAGAAGGCAATGATGTTGACTTGGAATTTTCAAAATTTGGATTTCTTCATAGAGCTGCTTCATTGACTGGGAATGATGGTCGACAACCAAAGTATTCTTGTCTCAGTGCTGAACCAATGAAAGAGGATTTCACAGGTCTTTCTTGGGAAGATCCTTCTTTCTTGCGTGCTGACTTTTATCCTCTTGATCAGCAAGACTGGGAAGATGAAATCATTTGGGGCAATTCTCCTACTGCAAGTGGCAGCAATTTTGAGAGCTGTGAAATTTCTGGACCTGACTTGGGAGCTTTAGGGTGTAGTGAAATAGGAATTGAGAGCGAGATGCAAAATATCCAGTTGGATCCGCAGAAGGAACTGGAGGAGAAAGATCATTGTGTTTTCTTGTGCAGCTCTCCTGTCTCATTGGAACCCTTTGGCTCAAGGGATTCTTCAGGACCTAAAACTGATTCATTGTCGCAAACTCTATTTCACCCCCAACTCTTGAGGTTAGAAACCAGATCTGAAGTGGACATCACTAATCTTGCAGATGACAGAAGGGAGAATATACCTGAGGAGCATAATCAAGGTGGCCTAGTAAAGCATTTTACTAAAGTTATGTCACAAAACCAAGACATGATGGAAGGGTCTTGGATAGACAAAATTATATGGGAGGAGGCTGATAGACCTATTGTGAAACCAAAGCTAATCTTTGATCTTCAGGATGATCAAATGCACTTTGAAGTTTTGGATAGCAAGGATGGTAGACATCTTCGCCTGCACGCAGGGGCTATGATTTTAACTCGGTCTTTAAAATCAAGTAGTGGAGACTCTTTGGAGCTGCCCGGACATGGAGGTCAATATGGATGGCGATCCATTGCTAATGACAAACATTATTCAAACAGGAAAACTTCTCAGCAACTGAAATCAAATTCTAAAAAACGCTCTGCTCATGGTGTCAAAGTTTTTCACTCTCAACCTGCACTGAAGCTTCAGACAATGAAATTAAAGTTGAGCAATAAAGATATTGCGAATTTTCACCGACCAAGGGCTCTTTGGTATCCCCATGTCAATGAGGTGGCTATCAAAGAACAAGGGAAATTGCCCACACATGGACCCATGAAAATTGTTATGAAGAGCTTGGGTGGCAAGGGGAGTAAACTGCATGTTGATGCTGAAGAAACTCTCTCTTCTGTTAAAGCAAAAGCTTCTAAAAAGCTAGATTTCAAGCTATCAGAAGCAGTGAAAATCTTTTATCTAGGGAAGGAGCTTGAAGACCAGAAATCACTAGCTGCACAAAATGTTCAACCAAACTCCTTGTTACATCTTGTTCGTTCAAATATATATTTATGGCCAAGGGCACAAAGGGTTCCTGGTGAGAATAAGTCCTTGCGTCCTCCTGGTGCATTCAAGAAAAAGTCTGATCTATCTGTGAAAGATGGACATGTTTTTCTAATGGAGTATTGTGAGGAAAGGCCTTTACTTTTGAGCAATGTTGGAATGGGTGCCAGACTTTGTACATACTATCAAAAATTTTCCCCAGATGATCAAGCTGGCTCCTTACTACGCAACACAAATAGTAGCTTGGGGCATGTTATTTCACTGGATCCTGCTGATAAATCTCCATTCCTTGGAGATTTAAAGCCCGGTTGCAGTCAGTCATCACTTGAGACAAACATGTATAGAGCACCCATATTTCCTCATAAAGTGCCATTAACTGACTACCTACTAGTTCGTTCATCAAAGGGAAAGCTATCATTAAGACGCATTGATAAAATTAATGTTGTTGGACAGCAGGAGCCTCTTATGGAGGTATTATCACCTGGAAGTAAGAATTTTCAGACATATGTGATGAACAGGCTACTGGTACACATGTGCCGTGAGTTTCAAGCAGCAGAGAAGCGTCGCTTGCCTCCATACATCCGTGCAGATGAGCTGCTGTCACAGTTTCCTTATCTATCAGAAACCTCTTTTCGCAAGAAAATGAAGGAATATGCCCATTTACAGAAGGGAACAAATGGACAGTTAATTTTGGCTAAAAAGCGAAATTTCCGCATGTGGTCCGAGGATGAATTGAGAAAAATGGTGACACCAGAGCTTGTTTGTGCCTATGAAAGCATGCAAGCCGGTTCATACCGTCTAAAACATTTAGGAATAACTGAAACACATCCTACTAATATATCTTCTGCTATGAGCCGGCTTCCTGATGAAGCAATAGCACTGGCTGCTGCATCACACATTGAGAGGGAGCTGCAGATTACTCCATGGAACCTGAGTAGCAATTTTGTGGCCTGCACAAGCCAGGGGAAGGAAAATATTGAACGAATGGAAATAACTGGTGTTGGTGATCCATCTGGCCGTGGCATGGGTTTTAGCTATGCTCGGGCTCCTCCAAAGGCACCTGTGTCAAGTGCAGTGGTGAAGAAGAAAGCAGCTGCTAGCCGGGGAGGTTCCACTGTTACTGGAACAGATGCTGATCTACGTAGATTAAGCATGGAGGCTGCACGAGAGGTTCTTCTTAAGTTCAATGTTCCTGAGGAAGTCATTGCAAAACAAACCAGGTGGCATCGCATTGCTATGATACGCAAACTTTCAAGTGAGCAAGCTGCATCTGGGGTTAAGGTTGACCCAACAACTATTAGCAAATATGCTCGTGGCCAGCGAATGTCCTTTCTTCAGCTACAGCAGCAGACCCGAGAGAAGTGCCAGGAGATTTGGGATCGACAAGTTCAGAGTCTTTCAGCTGTAAATGGTGATGAAAATGATAGTGATTCTGAAGGAAACAGTGATCTAGATTCTTTTGCCGGTGATCTGGAAAATTTACTTGATGCTGAGGAGTGTGAGGAAGGAGAAGAGGGTACCACTGACTTCAAACGTGATAAGGCAGATGGTGTTAAGGGTCTTAAAATGAGAAGACGTCCAACCTTAGCCCAGGCAGAGGAGGAAATTGAAGATGAAGCTGCTGAGGCTGCTGAATTATGCAAGTTGCTCATGGATGATGATGAAGATGACAGGAAGAAAAAGAAGAAGACTAGATTTGTTGTTGAGGAAGCAGGTTTGGTACCAAAGCTTCAATCAAGATTTGCCTTTGACAATACAGATCTAGTTAAGCAAATAACAAATACAGTGCAACTAGATGGAACCAATATTTTGAAAGAAAATACAATTACAAGTCTCAGGGAGGAGGGAAGCTTTTCTGCTAAAAAAAGCAAATCAGTGAAGGGCAACAAAGCAAAGAAGAGTGACATTACACCTATTAGTCTACCCAATAAAAAATTAAAATTAAATATAGGAGATGGAATCAAGGTATTCAAGGAGAAAAAACCATCCAGGGAAAGTTTTGTTTGTGGAGCATGTGGTCAGCTTGGGCATATGAGAACAAACAAGAACTGTCCAAAATATGGTGAAGATCTAGAGGCACAACTTGAATCTATAGACATGGAAAAAAGTGGGGGAAAATCAAGCTCCTTGGATCCCTCTGGTCAGTCCCAGCAGAAAGCCCTTGCCAAGAAGCTAATATCAAAAAGCTTAACAAAAATCGCTCCAGTTGAAGCTCCTGAGGGAGAAAAATCTAGTTTGAGGACAAAAGTTCTTCCAGTGAAGTTTAAATGCAGCTCCACTGAAAAACTTTCTGATAAACCTGCAATAGAAGCCACACAGAGTTCTGACAAGCCAGTAACTTCTGACTCAGAAACTGCAAAATCTGGTAAGGTTAGTAAAATTTTAATTCCCAACAAAGTGAAGCGAAATGATATGCAGGCTGAATCTCGTAAGCGTGCTATTGCTATACGGCCTCCTACTGATACAGGTAGAGGTCCAATTGATTCCCATAAACCCTCAATTATAATAAGACCTCCTACAGAAACAGATAGGGAGCAACCCCACAAGAAAATTATTATAAAACGCACAAAGGAGGTTATTGATCTGGACCAGGTCAGTCCTGGTGGAAACACAGGATTTGAACACAGAAAAACGAAAAGAATTGTTGAATTGTCAAATTTTGAGACGCACAGAAAACAGGAGACCATTTATTCAGCCAAAGAACTGGTAAAACGGAAAGCTAAAGAGGATAGAAGATGGTGGGATGAGCAAGAGAAGAGGAGAAATGAAGAAAGACTCAGAGAAGATAGGGCAAGGAGACATCATGAAGAAGAAATCAGGATGTTGAAAGAGCAAGAAAGATTAGCTGAATTAAAAAGATATGAAGAAGATATTAGGAGAGAGAGGGAGGAAGAAGAGCGGCAGAAAGCAAAGAAGAAAAAGAAGAAAAAGGCTGAATTCAGAGATGAGTATTTAGATGACCATAGAACAAGAAGATATGATAATAGGGTGCTAGAAAGAGATAGGAGTGGAAAAAGGAGATCTGTTGTTGAGTTGGGAAGGTATGATGCCGAGTTCACGCCACCAACAAAGCGGCGTAGAGGGGGAGGGGGAGAGGTTGGATTGGCAAATATTTTGGAGCGCGTGGTGGACGCCCTTAAAGATAGGTATGATCTATCCTATCTTTTCTTGAAACCAGTGTCCAAGAAAGAGGCTCCTGACTACCTGGACATTATAGAGAGGCCTATGGATCTTTCAAGAATTAGGGAGAAGGTGCGGAATATGGAGTACAAGAGCAGAGAAGATTTCAGGCATGATGTCTGGCAGATTACATATAATGCCCATAAATATAACGACGGGCGAAATCCTGGGATTCCTCCCCTTGCGGATCAGCTTTTGGAGCTTTGTGATTATTTGTTGAATGAGAACGATGATAACCTGACTGAAGCTGAAGCTGGTATTGAAGTTAGAGATTTCTAG 5742 0.4169 MHGKDAIFVQPPAQKAYEEDTKRVCLQSMGYDSDSPSQDGRDEDDEEEYEEAGKDDRLLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTDIDLSGKSPQTSADVVEQDYGEKAEDAVDYEDIDEEYDGPETEAANEEDYLVPKKEFFSVEASLEAFKSRASVFDDENYDEESEKEQDLVNNNSEVDNISITGEQVESLADTSKGQRTPEVDSQVVSLQTEESDGDVQKLQDYKTIMVNFLFIYGMVILRFSEIFGIHEPLRKGGKREHRPSIPRDRYKSLNLSDIVEEDEEAFLRGSSQNLVLNKQAFVVQNGISEGNDVDLEFSKFGFLHRAASLTGNDGRQPKYSCLSAEPMKEDFTGLSWEDPSFLRADFYPLDQQDWEDEIIWGNSPTASGSNFESCEISGPDLGALGCSEIGIESEMQNIQLDPQKELEEKDHCVFLCSSPVSLEPFGSRDSSGPKTDSLSQTLFHPQLLRLETRSEVDITNLADDRRENIPEEHNQGGLVKHFTKVMSQNQDMMEGSWIDKIIWEEADRPIVKPKLIFDLQDDQMHFEVLDSKDGRHLRLHAGAMILTRSLKSSSGDSLELPGHGGQYGWRSIANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPRALWYPHVNEVAIKEQGKLPTHGPMKIVMKSLGGKGSKLHVDAEETLSSVKAKASKKLDFKLSEAVKIFYLGKELEDQKSLAAQNVQPNSLLHLVRSNIYLWPRAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNVGMGARLCTYYQKFSPDDQAGSLLRNTNSSLGHVISLDPADKSPFLGDLKPGCSQSSLETNMYRAPIFPHKVPLTDYLLVRSSKGKLSLRRIDKINVVGQQEPLMEVLSPGSKNFQTYVMNRLLVHMCREFQAAEKRRLPPYIRADELLSQFPYLSETSFRKKMKEYAHLQKGTNGQLILAKKRNFRMWSEDELRKMVTPELVCAYESMQAGSYRLKHLGITETHPTNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGRGMGFSYARAPPKAPVSSAVVKKKAAASRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNGDENDSDSEGNSDLDSFAGDLENLLDAEECEEGEEGTTDFKRDKADGVKGLKMRRRPTLAQAEEEIEDEAAEAAELCKLLMDDDEDDRKKKKKTRFVVEEAGLVPKLQSRFAFDNTDLVKQITNTVQLDGTNILKENTITSLREEGSFSAKKSKSVKGNKAKKSDITPISLPNKKLKLNIGDGIKVFKEKKPSRESFVCGACGQLGHMRTNKNCPKYGEDLEAQLESIDMEKSGGKSSSLDPSGQSQQKALAKKLISKSLTKIAPVEAPEGEKSSLRTKVLPVKFKCSSTEKLSDKPAIEATQSSDKPVTSDSETAKSGKVSKILIPNKVKRNDMQAESRKRAIAIRPPTDTGRGPIDSHKPSIIIRPPTETDREQPHKKIIIKRTKEVIDLDQVSPGGNTGFEHRKTKRIVELSNFETHRKQETIYSAKELVKRKAKEDRRWWDEQEKRRNEERLREDRARRHHEEEIRMLKEQERLAELKRYEEDIRREREEEERQKAKKKKKKKAEFRDEYLDDHRTRRYDNRVLERDRSGKRRSVVELGRYDAEFTPPTKRRRGGGGEVGLANILERVVDALKDRYDLSYLFLKPVSKKEAPDYLDIIERPMDLSRIREKVRNMEYKSREDFRHDVWQITYNAHKYNDGRNPGIPPLADQLLELCDYLLNENDDNLTEAEAGIEVRDF 1913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0802 1913 FunFam Transcription initiation factor TFIID subunit 1 1753 1909 - -
Glsi09g0802 1913 SUPERFAMILY Ubiquitin-like 681 759 IPR029071 -
Glsi09g0802 1913 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 41 1911 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Glsi09g0802 1913 Gene3D - 688 761 - -
Glsi09g0802 1913 Pfam TATA box-binding protein binding 46 89 IPR009067 -
Glsi09g0802 1913 SMART bromo_6 1789 1899 IPR001487 GO:0005515
Glsi09g0802 1913 MobiDBLite consensus disorder prediction 1462 1481 - -
Glsi09g0802 1913 CDD Bromodomain 1799 1894 - -
Glsi09g0802 1913 Gene3D - 1706 1912 IPR036427 GO:0005515
Glsi09g0802 1913 MobiDBLite consensus disorder prediction 38 52 - -
Glsi09g0802 1913 MobiDBLite consensus disorder prediction 1526 1549 - -
Glsi09g0802 1913 Gene3D - 51 96 IPR036741 -
Glsi09g0802 1913 Coils Coil 1290 1310 - -
Glsi09g0802 1913 MobiDBLite consensus disorder prediction 95 141 - -
Glsi09g0802 1913 SUPERFAMILY Bromodomain 1781 1903 IPR036427 GO:0005515
Glsi09g0802 1913 ProSiteProfiles Ubiquitin domain profile. 688 758 IPR000626 GO:0005515
Glsi09g0802 1913 SMART ubq_7 688 760 IPR000626 GO:0005515
Glsi09g0802 1913 Pfam Ubiquitin family 692 760 IPR000626 GO:0005515
Glsi09g0802 1913 MobiDBLite consensus disorder prediction 26 56 - -
Glsi09g0802 1913 ProSitePatterns Bromodomain signature. 1814 1871 IPR018359 -
Glsi09g0802 1913 MobiDBLite consensus disorder prediction 609 633 - -
Glsi09g0802 1913 MobiDBLite consensus disorder prediction 1576 1608 - -
Glsi09g0802 1913 Coils Coil 1693 1744 - -
Glsi09g0802 1913 ProSiteProfiles Bromodomain profile. 1809 1879 IPR001487 GO:0005515
Glsi09g0802 1913 SUPERFAMILY TAF(II)230 TBP-binding fragment 57 90 IPR036741 -
Glsi09g0802 1913 Pfam Protein of unknown function (DUF3591) 607 1174 IPR022591 -
Glsi09g0802 1913 MobiDBLite consensus disorder prediction 1720 1741 - -
Glsi09g0802 1913 CDD Ubl_TAFs_like 688 759 - -
Glsi09g0802 1913 Pfam Bromodomain 1800 1875 IPR001487 GO:0005515
Glsi09g0802 1913 FunFam Transcription initiation factor TFIID subunit 1 670 760 - -
Glsi09g0802 1913 MobiDBLite consensus disorder prediction 1523 1559 - -
Glsi09g0802 1913 PRINTS Bromodomain signature 1842 1860 IPR001487 GO:0005515
Glsi09g0802 1913 PRINTS Bromodomain signature 1812 1825 IPR001487 GO:0005515
Glsi09g0802 1913 PRINTS Bromodomain signature 1860 1879 IPR001487 GO:0005515
Glsi09g0802 1913 PRINTS Bromodomain signature 1826 1842 IPR001487 GO:0005515
Glsi09g0802 1913 MobiDBLite consensus disorder prediction 121 141 - -
Glsi09g0802 1913 MobiDBLite consensus disorder prediction 613 627 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0802 688 758 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.437 3.98e-07 49.3