Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0800 ATGTCCCTTCTGAGCAGATTCTTTTACAAGAGACCCCCAGATGGTTTGCTCGAATTTGTCGATAGAGTATATGTTTTTGATTCCTGCTTTTCCACGGAAGCATTGCCTGATGAAATGTATCAGATATATTTACACGAAATCATCACTGAGTTACATGAAGAATTCCCGGACTCTTCCTTTTTCGCTTTCAATTTTCGCGAAGGTGAGAAACGTAGTCAATTTGCAGAAATTCTTTGTGAATACGATGTTACTGTGATGGATTATCCGCGACAGTATGAGGGTTGTCCTGTTCTTCCATTGTCGTTGGTTCAACATTTTCTTCGCGTTTGTGAGAGCTGGCTTTCCCTTGGGAATCAGCAGAATGTTATCCTTCTCCACTGCGAGAGAGGGGGTTGGCCTCTCTTGGCGTTTCTATTAGCTAGCTTTCTAATTTTTAGAAGACTACACAATGGTGAACGGAAAACACTTGAAATGGTGCATAGAGAGGCTCCCAAAGGTTTCTTACAGCTCTTGTCGCCTTTAAACCCATTGCCTTCTCAGCTTCGTTACGTTCAGTATGTAGCAAGAAGGAACATAGCTCCTGAGTGGCCGCCTCCTGAGCGAGCTCTTTCTCTAGATTGTGTCATTCTCAGAGCCATTCCTAGTTTTGATTCCCAGAACGGATGCAGACCCATTATCCGCATCTTTGGTAGGAATCTTCTTAGCAAGGGCGGGCTTTCTACCCAGATGCTCTATTCCATGCACAAGAAAAAGAAAACGTTAAGGCACTATCGCCAGGCAGACTGTGATGTGATCAAGATTGACATTCAATGTTTAGTACAAGGGGATGTGGTATTGGAGTGTGTCCATTTGGACCTGGATCTGGAAAGGGAAGTAATGATGTTTCGTATAATGTTCAACACGGCATTTCTTCGATCCAACATTTTGATGCTGAACACTGAAAACCTGGACATTCTCTGGGATTCAAAGGAGCGGTATCCGAAAGGCTTCCGAGCAGAGGTTTTGTTTGGGGAGGTTGAGAGCATATCTCCTCCAAGAGCTCCAACAACCATGTTAAATGGTGAGGAGAAAGGTGGGCTGCCCATAGAAGCTTTTTCAAGGGTTCAAGAACTTTTTAGTGGTGTAGAGTGGCTAGACAGTGGTGATGATGCTGCTGTCTGGTTGCTTAAACAACTTTCTGTGTTAAATGATGTCAAAGAGCTTTCAAGATTTCAAAGTAAAGCAAGTTGGTACTCATCACCTGCTGACTCCGAAGAAGAAAATAATGAATCAAGCACTGCTGATAGTTCAGATGAAGCCTTTGATGTTATTCCCAAGTCTTCTACTGATCTTTCCAAATTATTGACATCTGACACCCATGATTCAGTCCATTTAGCTTTTGAAAATGATGGTAGAAATCATTTACATCTCACTTCAAGACCTCCTGATCAGTCATTGATTGAAATTGTTCCACCATCTCATCATGCTCTAAATAAAGAATATTCTCCTTGTTCGTCTCCACCATCACCATCACCTCCAACTTTTCTTGCTTCTCTATCTCTGCCACCAACAGCAGCACCAGCACCACCTCCTTCTCCACCTCCACCTCCACCTCCAATGATAGCCACTAAAGGGCCTCCTCCACCACCACCTCCCCCTCCTCCACCTCCAATGATAGCCACTAAAGGGCCTCCTCCACCACCACCGCCCCCTCCTCCACATCCAATGATAGCCACTAAAGGGCCTCCTCCTCTACCACCTCCTCCTCCTCCTCCTCCTCCGCTCCCATTTGTCTCTTGCAAAGCTCCGCCGCCGCTTCCGCCTCCACCACCTCCCCCTTATCCATCCACTTCTAATCAACAAACTTTGCCGCCGCCACCACCACCACCTCCCCCTTATCCATCCACTTCTAATCAACAAACTTTGCCACCACCACCACCACCACCACCTCCCCCTTATCCATCCACTTCTAATCATCAAACTTTGCCACCACCGCCACCGCCGCCGCCACCTCCTCCTCCACCACTGCTGCCATCCACTATGGGAAGTACAACTAACAAGGTGCCACAACCACCGCCACCGCCACCATTGCCACATCTAGTATCAAACTTTTCAACTTCATCTAATACCAAATCTATCCAGGGGGAAAGACCTCCACCTCCACCTCCACCACCCCCACCACCTGCACTTCCTATAGGCCACAATGCTAGTAATGCTTCTAAATTACCTCCACCTCCACCTCCCCCTCCTCCAGGACCTATACGATTAGGTTTAGTCCCCCCACCTCTGCCACCAGTGCCTAAGCCCCCAAATGCTCCACCTCCACCACCTAATCGTGCTGCAGCACCAGCTCCACCTCCACCACCTAGTCGTGGTGGAACACCTACTCCACCGCCACCTCCTGCAGCCAGGGGATCTGGTGTACCACCACCACCTCCCCTATCTACTGCAAAAGGTAAATCTTCTTCAGCACCAACAAATGTTGGAAGAGGTCGAGTTTTGGGTGGGACTGCTAATGCCCCTAAGAAAGCTTCGTTAAAGCCCCTACATTGGGTGAAAGTTACTCGAGCATTGCAAGGCAGTCTATGGGCTGATTCACATAAACAAGATAATCAATCAAGGGCCCCTGAAATAGATATATCAGAACTTGAGAGTCTGTTTTCAGCAGCGTCTGCTTCTGATGGGAGTAGTACTAAAGGTGGAGGTCGGCGTGGTTCTAATATCAACAAACCTGAGAAAGTACAATTGGTTGACTTGCGAAGGGCATATAATTGTGAAATAATGCTCTCTAAAGTCAAAATTCCTTTGCCAGATATGCTTAATGCAGTTCTGGCATTGGATTCTTCTGCTTTGGATATTGATCAGGTTGAGAATCTCATTAAGTTCTGTCCCACAAAGGAAGAAATGGAGATGTTGAAGAATTACACTGGAAACAAGGAAATGCTTGGGAAATGTGAACAGTTTTTCATGCAGCTGATGAAGGTTCCACGAGTAGAATCTAAGTTACGAGTGTTTGCTTTTAAAATAACCTTTTCTAGTCAGGTGAATGATTTAAGATTAAATTTGAATGCAATCAATGATGCTGCTAGAGAGGTGAAAGAATCTGTGAAGCTGCGTCAAGTTATGCAGACTATTCTTACTTTGGGCAATGCCTTGAATCAGGGAACTGCAAGAGGATCTGCAGTAGGATTCAAATTGGATAGCCTTCTTAAATTATCTGATACTCGTGCAAGAAACAACAAAATGACTCTGATGCATTATTTGTGTAAGCTTCTTTCTGAGAAAATGCCAGAATTGCTAGATTTTGGCAAGGATCTTGGTCATTTAGAAGCAGCTTCTAAGATCCAACTGAAAGCATTGGCTGAAGAAATGCAAGCTGTGAGCAAAGGTCTGGAGAAAGTTGAGCAAGAACTCAGTGCTTCAGAAAATGATGGGGTTATATCTGCAGGATTCCGGAAGGTGTTGAAGAATTTTCTTGACATCGCCGAAGCTGAAGTGAGGTCACTTATATCATTGTATTCTGAAGTGGGAAGAAATGCAGATTCTTTGTCCCAGTACTTTGGGGAGGATCCAGCTCGGTGCCCCTTTGAGCAAGTGACACAAATCCTGAATGTCTTTGTCAAGATGTTCAACAAGTCAAGGGAGGAGAATGAAAGGCAGGCAGATGCTGAAAAGAAGAAATTAGAGAAAGAAGCCATGAAGGAAGGGACAGCAATTAACACACATTCAAAAAAAGATGGTATTCAGTAG 3729 0.4529 MSLLSRFFYKRPPDGLLEFVDRVYVFDSCFSTEALPDEMYQIYLHEIITELHEEFPDSSFFAFNFREGEKRSQFAEILCEYDVTVMDYPRQYEGCPVLPLSLVQHFLRVCESWLSLGNQQNVILLHCERGGWPLLAFLLASFLIFRRLHNGERKTLEMVHREAPKGFLQLLSPLNPLPSQLRYVQYVARRNIAPEWPPPERALSLDCVILRAIPSFDSQNGCRPIIRIFGRNLLSKGGLSTQMLYSMHKKKKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDLEREVMMFRIMFNTAFLRSNILMLNTENLDILWDSKERYPKGFRAEVLFGEVESISPPRAPTTMLNGEEKGGLPIEAFSRVQELFSGVEWLDSGDDAAVWLLKQLSVLNDVKELSRFQSKASWYSSPADSEEENNESSTADSSDEAFDVIPKSSTDLSKLLTSDTHDSVHLAFENDGRNHLHLTSRPPDQSLIEIVPPSHHALNKEYSPCSSPPSPSPPTFLASLSLPPTAAPAPPPSPPPPPPPMIATKGPPPPPPPPPPPPMIATKGPPPPPPPPPPHPMIATKGPPPLPPPPPPPPPLPFVSCKAPPPLPPPPPPPYPSTSNQQTLPPPPPPPPPYPSTSNQQTLPPPPPPPPPPYPSTSNHQTLPPPPPPPPPPPPPLLPSTMGSTTNKVPQPPPPPPLPHLVSNFSTSSNTKSIQGERPPPPPPPPPPPALPIGHNASNASKLPPPPPPPPPGPIRLGLVPPPLPPVPKPPNAPPPPPNRAAAPAPPPPPSRGGTPTPPPPPAARGSGVPPPPPLSTAKGKSSSAPTNVGRGRVLGGTANAPKKASLKPLHWVKVTRALQGSLWADSHKQDNQSRAPEIDISELESLFSAASASDGSSTKGGGRRGSNINKPEKVQLVDLRRAYNCEIMLSKVKIPLPDMLNAVLALDSSALDIDQVENLIKFCPTKEEMEMLKNYTGNKEMLGKCEQFFMQLMKVPRVESKLRVFAFKITFSSQVNDLRLNLNAINDAAREVKESVKLRQVMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLSEKMPELLDFGKDLGHLEAASKIQLKALAEEMQAVSKGLEKVEQELSASENDGVISAGFRKVLKNFLDIAEAEVRSLISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILNVFVKMFNKSREENERQADAEKKKLEKEAMKEGTAINTHSKKDGIQ 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0800 1242 Coils Coil 1204 1227 - -
Glsi09g0800 1242 PRINTS Pistil-specific extensin-like signature 544 562 IPR003882 -
Glsi09g0800 1242 PRINTS Pistil-specific extensin-like signature 511 534 IPR003882 -
Glsi09g0800 1242 PRINTS Pistil-specific extensin-like signature 650 671 IPR003882 -
Glsi09g0800 1242 SMART it6_source 523 1242 IPR015425 -
Glsi09g0800 1242 MobiDBLite consensus disorder prediction 491 834 - -
Glsi09g0800 1242 ProSiteProfiles Formin homology-2 (FH2) domain profile. 829 1229 IPR015425 -
Glsi09g0800 1242 Gene3D - 197 342 - -
Glsi09g0800 1242 PANTHER FORMIN-J 636 1238 - -
Glsi09g0800 1242 MobiDBLite consensus disorder prediction 498 672 - -
Glsi09g0800 1242 Pfam Formin Homology 2 Domain 833 1204 IPR015425 -
Glsi09g0800 1242 MobiDBLite consensus disorder prediction 1207 1242 - -
Glsi09g0800 1242 MobiDBLite consensus disorder prediction 733 809 - -
Glsi09g0800 1242 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Glsi09g0800 1242 Coils Coil 1110 1137 - -
Glsi09g0800 1242 FunFam Formin-like protein 829 1215 - -
Glsi09g0800 1242 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 339 IPR035892 -
Glsi09g0800 1242 SMART PTEN_C2_2 198 338 IPR014020 -
Glsi09g0800 1242 Gene3D Formin, FH2 domain 829 1215 IPR042201 -
Glsi09g0800 1242 MobiDBLite consensus disorder prediction 409 433 - -
Glsi09g0800 1242 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Glsi09g0800 1242 SUPERFAMILY Formin homology 2 domain (FH2 domain) 842 1223 - -
Glsi09g0800 1242 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 187 IPR029021 -
Glsi09g0800 1242 Coils Coil 1008 1028 - -
Glsi09g0800 1242 MobiDBLite consensus disorder prediction 882 902 - -
Glsi09g0800 1242 MobiDBLite consensus disorder prediction 708 725 - -
Glsi09g0800 1242 MobiDBLite consensus disorder prediction 882 897 - -
Glsi09g0800 1242 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0800 Glsi-ChrGlsi09 5508871 5520507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0800 1 471 FH2 protein (formin) Gene Family AT1G31810 73.885 0.0 771