Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0796 ATGGAACCCAACGACGTATTAGAGGAGCTGCTAAACGTAGAGGTTGAGATTCAAGACGTCGAAGATCAAATAAGAGCATTGATTGAAAGACAAGAGAAGTTGTATGAGAGAAAATCAGAGCTGAAGGCTATACTGGAAGCATATGAAGAATCTGGAAAACAGATCAATAATGGTGCTCCTGGTACTGCGGAAAATTGGTCTGGGCCATTTGAATGGGATTCTGAAGCAGATGACTTCAGATTGAATCTTTTTGGCATTTCTACATACCGTACAAATCAAAGAGAGATTATTAATGCCATCATGAGTCGAAGGGATGTTCTAGTGATTATGGCTGCAGGTGGTGGCAAGAGCCTCTGCTATCAGCTTCCAGCTGTTCTTTGTGATGGAATTGCTCTTGTTGTTAGTCCTTTGCTTTCCTTAATTCAGGATCAGGTGATGGGTTTGACTGCTTTAGGCATTCCAGCATATATGTTGACATCAACAACAAGTAAGGAAGATGAAAAGTTCATATACAAGGCTCTGGAGAAGGGTGAGGGGGATCTCAAAATATTGTATGTCACACCAGAAAAGATATCAAAGAGCAAAAGGTTTATGTCAAAACTTGAAAAATGCCATCATGCTGGTCGTCTTTCTCTTATTTCAATAGATGAGGCACATTGTTGTAGTCAGTGGGGTCATGACTTCCGACCTGACTACAAGAACCTCAGTATTCTCAAGACTCAATTTCCTAATGTTCCATTAGTTGCTTTGACCGCAACTGCTACTCAAAGGGTCCAAAATGATCTGATGGAGATGTTGCATATTCCAAGATGTGTCAAATTTGTCAGCACAGTCAACAGGCCAAACCTGTTTTATATGGTAAAGGAAAAGTCATCTGTTGGTAAGGTGGTTATTGATGAAATTGCTGAATTCATTCAAGAATCTTATCCAAATAATGCATCCGGGATAGTCTATTGCTTTTCTAGGAAGGAATGTGAGCAGGTTGCAAAGGAGTTAAGAGAAAGGGGAATTTCAGCAGATTATTACCATGCAGATATGGATGTAGTTGCTCGGGAAAAAGTACATATGCGGTGGAGCAATAGCAAGTTGCAGGTCATAGTTGGTACAGTAGCATTTGGTATGGGAATCAACAAACCAGATGTCAGATTTGTCATCCATCACAGCTTGAGCAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGTCGAGATGGACTCCCATCTGAATGTGTACTGTACTTTAGACCTGGTGATGTCCCCCGACAGAGTTCAATGGTATTCTACGAAAATTCAGGACTGCAGAATTTGTATGATATAGTACGGTATTGTCAGTCAAAAAACCAATGCCGCCGAAGCGCCTTTTTCCAGCACTTTGCTGAGCCACCACAAGACTGCAATGGGATGTGCGACAACTGTGCATTCTCAAGCAATGTAAAGGAACTGGATGTCCATTGTCATGCAAAGCTGATCGTTTCTTTGTTGCAAGATATGAAAGGGAATGATCAGAGGTTGACAATGTTGCAGTTAGTTGACAAAGTGAAAATAAAGCAGAAGGAACTAGGTTCGAACTTGAAAAAAGAGGAAATAGAGCAGCTTATCTTACAGCTTTTATTGGAGCGTGTATTGAAAGAAGAGTTTCAGCATACAGCTTATTCCACAAATGCTTATGTAACTGTGGGGCCATTGGCCAAGCAAATATTACAAGGGAAGAAGACTGTTATGATTGAGATTTTTTGCCAACAGCAAACAAAGGCTGGTGTAAGATCAGCTAAACGCGGCCTGGGTTCCTCTGTTTTGGAGCTAAAGCTTGATGAGCTGAGAAAAGAATTGTCTTCCATTCATGGAGGGATACTCCCACATTCTGTCTTATCCACTCAACAAATCAGCCTAATAAGTTCTCAAAAACCAAATTCACTGGAACAGTTGGAGAAGATAATTGGAAAATTGAAGACACAAAAATATGGAGATAGAATACTTATGCAAATTGAAAAGTATTCTGATTTCAAGCCGCCTGATGAGATAAATGAAAAGGGCTCTGATGGTAGAGCTGCAAAGAGATCGAAGACAAAGAAAACTGTCGTGCTTGTTGGGAGTAGTGAAGATGAAGCATGA 2118 0.4065 MEPNDVLEELLNVEVEIQDVEDQIRALIERQEKLYERKSELKAILEAYEESGKQINNGAPGTAENWSGPFEWDSEADDFRLNLFGISTYRTNQREIINAIMSRRDVLVIMAAGGGKSLCYQLPAVLCDGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTSKEDEKFIYKALEKGEGDLKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPNVPLVALTATATQRVQNDLMEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKVVIDEIAEFIQESYPNNASGIVYCFSRKECEQVAKELRERGISADYYHADMDVVAREKVHMRWSNSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECVLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKNQCRRSAFFQHFAEPPQDCNGMCDNCAFSSNVKELDVHCHAKLIVSLLQDMKGNDQRLTMLQLVDKVKIKQKELGSNLKKEEIEQLILQLLLERVLKEEFQHTAYSTNAYVTVGPLAKQILQGKKTVMIEIFCQQQTKAGVRSAKRGLGSSVLELKLDELRKELSSIHGGILPHSVLSTQQISLISSQKPNSLEQLEKIIGKLKTQKYGDRILMQIEKYSDFKPPDEINEKGSDGRAAKRSKTKKTVVLVGSSEDEA 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0796 705 Pfam Helicase conserved C-terminal domain 309 406 IPR001650 -
Glsi09g0796 705 SMART RQC_2 484 581 IPR018982 GO:0006260|GO:0006281|GO:0043138
Glsi09g0796 705 FunFam ATP-dependent DNA helicase 599 669 - -
Glsi09g0796 705 Coils Coil 10 51 - -
Glsi09g0796 705 FunFam ATP-dependent DNA helicase 49 279 - -
Glsi09g0796 705 CDD SF2_C_RecQ 280 416 - -
Glsi09g0796 705 Gene3D - 280 476 IPR027417 -
Glsi09g0796 705 MobiDBLite consensus disorder prediction 671 705 - -
Glsi09g0796 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 423 IPR027417 -
Glsi09g0796 705 CDD DEXHc_RecQ1 71 279 - -
Glsi09g0796 705 Gene3D - 47 279 IPR027417 -
Glsi09g0796 705 MobiDBLite consensus disorder prediction 671 689 - -
Glsi09g0796 705 PANTHER DNA HELICASE RECQ FAMILY MEMBER 66 661 - -
Glsi09g0796 705 Gene3D - 479 580 IPR036388 -
Glsi09g0796 705 Pfam RecQ zinc-binding 419 475 IPR032284 -
Glsi09g0796 705 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Glsi09g0796 705 ProSiteProfiles HRDC domain profile. 595 674 IPR002121 GO:0003676
Glsi09g0796 705 SMART helicmild6 326 407 IPR001650 -
Glsi09g0796 705 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 446 IPR001650 -
Glsi09g0796 705 Pfam RQC domain 482 579 IPR018982 GO:0006260|GO:0006281|GO:0043138
Glsi09g0796 705 FunFam ATP-dependent DNA helicase 480 580 - -
Glsi09g0796 705 Pfam HRDC domain 604 661 IPR002121 GO:0003676
Glsi09g0796 705 NCBIfam RecQ family ATP-dependent DNA helicase 82 507 IPR004589 GO:0004386|GO:0006310
Glsi09g0796 705 FunFam ATP-dependent DNA helicase 280 476 - -
Glsi09g0796 705 Gene3D HRDC domain 599 668 IPR044876 -
Glsi09g0796 705 SMART ultradead3 85 288 IPR014001 -
Glsi09g0796 705 Pfam DEAD/DEAH box helicase 92 259 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0796 Glsi-ChrGlsi09 5476260 5486788 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0796 315 421 Eukaryotic Initiation Factors Gene Family AT3G19760 20.561 7.31e-07 50.4