Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0778 ATGGGATCCAGTGGTAGCAAAGCCGCTTCCTCTTGCAGTTCGTCGTCAACGTCGTCTTCTTCCGGCGGTTTCCGGAAGGGTCGATCAAAGGGACCCAGAGGTTTTCAGTCGTATTGTCTAGGAACAACATCTAGATCTCATGACAGTGATAATGATGACCAGGTTTGTGATCAGAATAAAGTAAAGGGCAGCGCTGTCAGTTACGCGAACTGCAACACAACAGACTCACATGAGATAAAAACAGAATCTTTTAGAAAGGATACAACAAATATGCCTGATAAAATGCCTTGTATGTCTTCTAACATTGACGTTGATGAGTGGGGTCAAACAAGCATTCCCAATAATTCATCCAGAACTAGTAGTCGCTCTAATCGTACTTCTTCGACTCAGTCCTTGAACCCTTCAAGTAGATTCCTTTCTCGGTTCAGCCTTATTCCTGGTAATATAAGTTTCAGACTTAGCAGAACCACGAGTTTGGGGTCATCAAGGTCTTACCCTGTTTCTTCTACAAGTGTCTCAATATTTAACAATGAAGATGAGCTTAATCTGCATCCAGGACCTACTGGCAGCTTGGCTAATAGAAATGGAACTCAACAACGTAGTGACTTGCTTCCTCCATCTTTTGATAACCAAATGCCTGCAGAGTGTTATGAAGATACTTCTAATAATTTAAGGTCTAATGCCCCAGCATTAGATTCGTCTGGCAATTTGCTCAATCACACAATTTCTTCTATCCGGGATGTGGTTGGAGATGGAGATGGTTCAAGAGAAAGGCTGGATGTAAATTTGTTTTCTCCAAGAATTCATATTGAGACTGAACACGTTGAGAGTCGACGAAATGGAGCTCGAGAACCTGTTGAACGGAATGTTCGGTTTAGTCGAACTCTAAGTGTCGGGAGGCTTCGTGATAGAGTTCTTCGTCGATCAACGTTATCTGATGTCAGCTTTTGCCCTCTGCAACAAGAGAGAGAAGAAAGGGATGCTAGTCACGATAGTGGAAGACAAGCAGGAGAGGGAGATTCAAGAGGGTCACTATCTTATAGTAATGCTGTAAATTCCCCTTCCACATCTGGATATCCTCCATCAAGTATGTCTAGCTCCTTGTTCAGCATCCAAGACTATGAAGTTGAGACTTCACGGTCAAGAGAGGCTAGGTATCAGGATCTAGTGGAACACAGATCCAATTTCCTTGAACGGAGAAGAAGAATACGGTCCCAGGTTCGTGCTCTTCAGAGGTTGGGTAGCCGGTTTGAAAATCTGTCTGGGCATGACAGATCTTGTATCTTGTCTGGTCAACATAGAACTGGTCGTTGTACATGCCGAATAGGTAGTCGCGATACCAGTTCAATTGATGATACCGGTACTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAGGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGCGGTTTTATCTTCTCGCCCTTCTGTGTCCTCCATTGGATCTGTTCCTGCTCCTATTGATGTTGTGGAGTCCTTGCCTGTCAGATTATACACAAAGTTGCATAAACATCAAGAGGATGCTGCACAATGCTATATATGCCTTGTGGAGTATGAAGATGGAGACAGCATGCGTGTGCTGCCTTGCCATCACGAATTTCATAGAACATGCATAGACAAGTGGCTCAAGGAGATTCACAGGGTATGCCCACTATGTCGAAGGGACATCTGCATATCTGATTCACTGTCAACGGAGAACTAA 1737 0.4375 MGSSGSKAASSCSSSSTSSSSGGFRKGRSKGPRGFQSYCLGTTSRSHDSDNDDQVCDQNKVKGSAVSYANCNTTDSHEIKTESFRKDTTNMPDKMPCMSSNIDVDEWGQTSIPNNSSRTSSRSNRTSSTQSLNPSSRFLSRFSLIPGNISFRLSRTTSLGSSRSYPVSSTSVSIFNNEDELNLHPGPTGSLANRNGTQQRSDLLPPSFDNQMPAECYEDTSNNLRSNAPALDSSGNLLNHTISSIRDVVGDGDGSRERLDVNLFSPRIHIETEHVESRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSTLSDVSFCPLQQEREERDASHDSGRQAGEGDSRGSLSYSNAVNSPSTSGYPPSSMSSSLFSIQDYEVETSRSREARYQDLVEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRTGRCTCRIGSRDTSSIDDTGTRASISRIVMLAEALFEVLDEIHQQSAVLSSRPSVSSIGSVPAPIDVVESLPVRLYTKLHKHQEDAAQCYICLVEYEDGDSMRVLPCHHEFHRTCIDKWLKEIHRVCPLCRRDICISDSLSTEN 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0778 578 FunFam Putative RING zinc finger domain superfamily protein 492 570 - -
Glsi09g0778 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 488 570 IPR013083 -
Glsi09g0778 578 MobiDBLite consensus disorder prediction 317 366 - -
Glsi09g0778 578 SUPERFAMILY RING/U-box 501 571 - -
Glsi09g0778 578 MobiDBLite consensus disorder prediction 319 337 - -
Glsi09g0778 578 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 577 - -
Glsi09g0778 578 MobiDBLite consensus disorder prediction 103 134 - -
Glsi09g0778 578 Pfam Ring finger domain 522 565 IPR001841 -
Glsi09g0778 578 ProSiteProfiles Zinc finger RING-type profile. 523 565 IPR001841 -
Glsi09g0778 578 SMART ring_2 523 564 IPR001841 -
Glsi09g0778 578 MobiDBLite consensus disorder prediction 339 366 - -
Glsi09g0778 578 MobiDBLite consensus disorder prediction 1 55 - -
Glsi09g0778 578 MobiDBLite consensus disorder prediction 1 25 - -
Glsi09g0778 578 MobiDBLite consensus disorder prediction 82 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0778 Glsi-ChrGlsi09 5370831 5375152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0778 48 572 C3H Transcription Factor Family AT5G45290 47.407 4.04e-115 351