LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi09g0747	ATGAGTAACACTAAAGAAAACGAGGAAGCTAGCCAGGACGCGCCATTGGCAGTGGATGAAAGCCAGCGATTGGTTGACGCACAGGTTCAACCCCAGGCTTCTTCTGCTCCTGTTTCAGAAGATAAAACTTCAAATCATGTTGAAAATGGGAAGGTAGAGACACCTGCCGGTGATAAAAATGAGGAATCGGAGGCCACCTCAGAGGGCATTCCACAACAAGAAGTTCAAAATACTCTTCACTCTGTCCCAGTAGAAGTTAATGCTCAAATTTTGGTTAAAACTGACCGTGAACATACTTCAGATGTGAAGACTGAAGTTCAAGAATCTTCTCATGCTGGTGCGTGTGAAAATAATCTTAATACTGCTGAAACAGTTGTCAAGGTCAAGCCGGAAGCTTGTGAAGCACCTGACCATAAAACTTGCAATAATGGTGATTCCATACTCTCATGTCATATAGATTCTACTACTCCTCAAGCTGTTCCGGCGGCTACAGAAGTTGCGAAGAAGAATGGACTACAAGTTGAGAATAAGGCTAATGAAGGGCAGGCTGCTGCACCTGCAGATAATGGGAATTCAAACTCAAAGCACTTATTTTTTTTGGATGCTGACCATTCATATGATGGTAATGAGTCGGGAACAGAAGAGGAGCAATCAGCTTTTATGAAGGAGCTTGAAAATTTCTTCAGGGAGAGGAGCATGGAATTCAAACCTCCTAAGTTCTATGGAGAGGGGCTTAATTGCCTGAAGTTGTGGAGAGCTGTGACCAGACTGGGTGGCTATGATAAGGTAACCTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACCACAGTTTCATGGACATTTCGAGGTTTTTATGAAAAGGCACTTCTTGATTATGAAAGGCATAAAACAAAAGGTGGTGAGCTTACTGTGCCTATTGTTCCTCATACTGAGCCTTTGAATATTGAAAATCAGGCTTCAGCATCAGGTAGAGCACGGAGAGATGCTGCTGCACGAGCAATGCAGGGTTGGCACTCACAACGTCTTCTTGCTAATGGTGAAGTTAGTGACCCTATTATTAAGGATAGGAATTCTATGTCTTTGCAAAAGCGTGAAAAGCAGCTTAAAAGTATCAATTTACTTAAACGTAAGAAACCATCTTACATGGATAATGCAGTCAAAGCGGCACGTAGTAAACCATCTAAACCACATTTGGACACGTCAGTGGTTGATGTTGGACCTCCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACTAAAGATTGTTTTGAGGTCTATGCTTTAGTTCCTGGTCTTCTTCGGGAAGAGGTGCGTGTTCAATCAGACCCAGCTGGACGCTTGGTCATAAGTGGTGAACCTGAGCATCCCGATAATCCTTGGGGCGTGACACCTTTCAAAAAGGTTGTCAGCTTGCCTTCAAGAATTGACCCTCATCACACTTCGGCTGTGGTGACCCTGCACGGACAATTGTTTGTTCGTGTCCCATTTGAGCAATCGGAATAG	1527	0.4355	MSNTKENEEASQDAPLAVDESQRLVDAQVQPQASSAPVSEDKTSNHVENGKVETPAGDKNEESEATSEGIPQQEVQNTLHSVPVEVNAQILVKTDREHTSDVKTEVQESSHAGACENNLNTAETVVKVKPEACEAPDHKTCNNGDSILSCHIDSTTPQAVPAATEVAKKNGLQVENKANEGQAAAPADNGNSNSKHLFFLDADHSYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTKGGELTVPIVPHTEPLNIENQASASGRARRDAAARAMQGWHSQRLLANGEVSDPIIKDRNSMSLQKREKQLKSINLLKRKKPSYMDNAVKAARSKPSKPHLDTSVVDVGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHHTSAVVTLHGQLFVRVPFEQSE	508

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi09g0747	508	Gene3D	-	405	508	IPR008978	-
	Glsi09g0747	508	SMART	ARID_2	211	301	-	-
	Glsi09g0747	508	MobiDBLite	consensus disorder prediction	1	81	-	-
	Glsi09g0747	508	FunFam	AT-rich interactive domain-containing protein 3	400	508	-	-
	Glsi09g0747	508	SUPERFAMILY	ARID-like	209	317	IPR036431	GO:0003677
	Glsi09g0747	508	SMART	bright_3	215	306	IPR001606	GO:0003677
	Glsi09g0747	508	MobiDBLite	consensus disorder prediction	25	43	-	-
	Glsi09g0747	508	FunFam	AT-rich interactive domain-containing protein 3	214	313	-	-
	Glsi09g0747	508	CDD	ACD_sHsps-like	423	503	-	-
	Glsi09g0747	508	ProSiteProfiles	ARID domain profile.	214	305	IPR001606	GO:0003677
	Glsi09g0747	508	Gene3D	-	214	311	IPR036431	GO:0003677
	Glsi09g0747	508	ProSiteProfiles	Small heat shock protein (sHSP) domain profile.	408	508	IPR002068	-
	Glsi09g0747	508	SUPERFAMILY	HSP20-like chaperones	417	504	IPR008978	-
	Glsi09g0747	508	CDD	ARID	216	301	-	-
	Glsi09g0747	508	MobiDBLite	consensus disorder prediction	66	81	-	-
	Glsi09g0747	508	Pfam	Hsp20/alpha crystallin family	425	507	IPR002068	-
	Glsi09g0747	508	MobiDBLite	consensus disorder prediction	44	65	-	-
	Glsi09g0747	508	Pfam	ARID/BRIGHT DNA binding domain	217	301	IPR001606	GO:0003677
	Glsi09g0747	508	PANTHER	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT	28	507	IPR045147	GO:0006357

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi09g0747	Glsi-ChrGlsi09	5106629	5114957	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi09g0747	198	506	ARID Transcription Factor Family	AT1G76510	63.057	1.30e-131	387

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	ARID	Glsi09g0747		HSP20	1.2e-05	CL0190