Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0737 ATGACTCGTGTACTAAGAATTCTCAAGTCCACGGACAACGCCACCTCCACGCTGGTGGCAGCGCCGCCGCCGGAGGCCGTAGCTTTGGAATCAGACTTCGTGGTGATTCTAGCAGCTCTGCTTTGCGCTCTCATATGCGTGGTGGGGCTCATAGCCGTCGCTCGCTGTGCGTGGCTCCGACGAGGCTCCGGCGCCGGTAGCTCCCCAAGGCAAGCTCTGGCGAACAAGGGACTGAAGAAGAAGGTGCTCCAATCTATACCCAAATTCACTTACATCAACAGCAACCCAGAAAAGTGGGTGGCTACGTCGGAGTGCGCGATTTGCTTGGCTGAGTTCGTGGAAGGCGACGAGATCCGAGTTCTGCCTCAGTGTGGTCACGGGTTCCATGTGGGGTGCATAGATACGTGGCTTGGATCCCATTCTTCATGCCCTTCTTGTCGGCAGATTCTTGCGGTGGCCAGGTGCCAAAAGTGCGGCCTTTACCCGGCTGTTAGCGGCGGAGATGCAGGCGTAGCCACCACAATCACTGTGAGTGAACCAGAGCTCAAGTCCAGAGAAGACGACAATGCCACTGCTAATAATAATATGACTAACGCCGTTAGCGCCAACGCGGATCATCATAGCCTCACTGTTAATAATGGATTCCTGCCATAA 654 0.552 MTRVLRILKSTDNATSTLVAAPPPEAVALESDFVVILAALLCALICVVGLIAVARCAWLRRGSGAGSSPRQALANKGLKKKVLQSIPKFTYINSNPEKWVATSECAICLAEFVEGDEIRVLPQCGHGFHVGCIDTWLGSHSSCPSCRQILAVARCQKCGLYPAVSGGDAGVATTITVSEPELKSREDDNATANNNMTNAVSANADHHSLTVNNGFLP 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0737 217 CDD RING-H2_EL5-like 104 147 - -
Glsi09g0737 217 SUPERFAMILY RING/U-box 89 152 - -
Glsi09g0737 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 152 IPR013083 -
Glsi09g0737 217 SMART ring_2 105 146 IPR001841 -
Glsi09g0737 217 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 25 159 - -
Glsi09g0737 217 Pfam Ring finger domain 104 147 IPR001841 -
Glsi09g0737 217 FunFam E3 ubiquitin-protein ligase ATL6 67 153 - -
Glsi09g0737 217 SMART FANCL_C_2 101 155 - -
Glsi09g0737 217 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0737 Glsi-ChrGlsi09 5052572 5053225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0737 1 158 C3H Transcription Factor Family AT1G76410 62.424 3.62e-63 192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1213 05 61699463 61700095 Glsi09g0737 09 5052572 5053225 CCT