Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0730 ATGGCGTCTCTCTCATTATTGTCCTGTTTCTTGCCCATTACCCAGAAGCTCGTGTTTCACACTGTTGCTTGCTCAGCTTTTCCAGAATTTTTATGGACTTTCTCTGCTTCTTCTTTTGGTTCTCTCTTTCAGTGGAACAGAGGGCGGCTGGTTGAAGTTGATCTTTTTATTCCCAAGTTGGATCAGGCTTCAGCTATAAACCCTTGGTTATGCCGTTATGGGCTTCGAGGATGTTGCTTGACTGTTTTGCTGAGCAGGGTGATAATTAGTGGCTTGAATTTTGGCAACTTCCAAGTTCCAACCATGATTGGAGTTTGGCTTGTGGTGTTAATGATTATCTCCAATGGAATCTCTTCAAATGGGGCTGGCATGAATGCTTCCAAAGTCCCTGATTCTGTAAATATTGGGGCTCTTTTCTCTTTCAATACTACTGTTGGTAGAATTGTAAAAATAGCCATAGAAGCAGCAGTTAAAGATGTAAATTCTGATCCTTCAATTCTTGGTAAAACTAAGCTGAAGGTCTCAATGCAAGAGGATTCCAAATACAGAGGTTTTTTGAGCATTGCTGAGGCCTTGCAGCTCATGTCAAATCACACTGTGGCTATAATTGGCCCGCAGACCTCTACAACAGCTCATGTCATATCTCATATTGCCAACGAGCTCCAAGTTCCACTGTTATCATTTTCAGCAACAGACCCCACCCTTTCTTCACTTCAATTCCCATTTTTTGTTAGAACTGCTCATAGTGATCTTTATCAGATGACTGCAATAGCAGAGCTTGTTGACTACTATGGATGGAGAGAGGTCATTGCACTCTATGTTGATGATGACCATGGGAGAAGTGGAATTGGTGCATTAGGGGATAAGCTTGCAGAGAGACGTTGTAAAATCTCATTTAAAGCACCTTTGAGCCCTGAACCAAGTCGGGAGGAGATTACCGATGTGCTTGTTCAGGTGGCTCTGGCTGAGTCACGGGTTATAGTTCTTCACACTAATGCTGCATGGGGCCCCAGTGTGTTTGGTGTGGCAAAGTATCTTGGGATGATGGGAACTGGTTATGTCTGGATAGCCACCAATTTTATCTCTACTCTGTTGGACACAGATAGTCCCCTCCCTTCAGATGCAATGGCTAATATTCAAGGAGTTATTACACTTCGTGTATACACACCAGATTCAGAGCTAAAAAGAAGGTTCTTTTCTAGGTGGAAGAACTTGACAAGTGGAATGACTGCTAATGGCCCCCTTGGATTGAGTACTTTTGGTCTCTATGCGTATGATACTGTTTATGTGCTTGCTCGTGCACTTGATACATTTTTCAAACAAGGAAACCTTATTACATTCTCATATGATTCGAAGTTATCTCAACTACACGGAGACAGCTTGCATCTTGATGCTGTGAACATCTTTAATGAAGGGAATCTGTTGCGTAAAAGTATTTATGGGGTTAACATGACTGGCGTAACAGGTCCATTTAAGTATACATCTGATGCAAACCTTGTACATCCAGCATTTGAAATCCTCAATGTCATTGGAACAGGATCTCGGAGGATTGGTTATTGGTCTAATTACTCTGGATTATCGGTTATTCCTCCTGCAGCACTTTATTCAAGACCAGCCAATCTTTCCAGTGCAAATCAAAAGCTACTGGCCGTGATTTGGCCTGGAGAAACTACCCAGAAGCCTCGTGGTTGGGTTTTTCCAAACAATGGAAGGCATTTAAGAATTGGAGTGCCAAAAAGGTTTAGTTACCGAGAATTTGTTTCACAAGGACCTGGCACTGATTTGTTTAAGGGATTCTGCATTGATGTATTTCTTTCAGCAGTGAACTTGTTGCCTTATGCTGTCCCCTATAAATTTATCCCATTTGGGGATGGTCGCAGCAATCCTAATAACTCTGAGCTTCTCCGTCAGATCCCAGCGGGTGTCTTTGATGCTGCAGTAGGTGACCTTACTATTACAACAGAAAGAACAAAGATGGTGGACTTCACTCAGCCATTTATTGAGTCCGGTCTAGTAGTAGTGGCACCAGTTAGGAAGTTGGAGTCTAATGCATGGGCCTTCTTGAGGCCATTTACACCAATGATGTGGTGTGTCACAGGTGTCTTTTTCTTAATAGTGGGAGCTGTTGTTTGGATTTTAGAGCACAGGCTGAATGATGATTTTCGGGGACCTCCCAAAAAACAAGTAGTGACAATTTTGTGGTTTAGTTTTTCAACCATGTTCTTCGCCCACAGGGAAAATACTGTGAGCACTCTTGGTCGCTTTGTGCTACTTATATGGTTATTTGTAGTTCTTATAGTTAATTCAAGTTACACAGCAAGCCTGACCTCAATCCTCACAGTACAACAGCTTTCTTCACCCGTTAAAGGCATTGAAAGTTTAATAAATAGCAAAGAGCCAGTTGGCTACTTGCAGGGTTCCTTCTCTCGAAATTATTTAGTAGAAGAAGTTGGCATTGCTGAATCTAGACTTGTTCCTCTAAAAACAGAGGATGATACTGCTAAAGCATTAAAAAATGGTCCAGGAAAGGGTGGGGTTGCTGCATATGTTGATGAGCGTGCCTTCACCGAGATCTTCCTTTCAAGCCGGTGTGATTTTACTACTGTAGGTCAAGAGTTCACCCGAAATGGTTGGGGATTTGCCTTTCCAAGAGACTCTCCTTTAGCAGTTGACCTGTCAACTGCCATTCTGGAATTGTCAGAGAATGGAGATCTTCAAAGGATCCATGACAAGTGGCTTTTGAGTAGTGCCTGCCTATCACAAGGTGCTAAGCTTGAAGTTGACAGACTTAATCTTAAAGCCTTCTGGGGCCTTTATCTAGTATGTGGGCTTGCTTGCTTGCTTGCTCTCTTCATCTATCTTATACAGATGATGAGGCAGTACAACAGGCATTACTCTGAGGAACTTGATACGTCCAGTTCTAACCGAAGCTCAGGATCATCGCGTCTTCGGACTTTCCTGTCATTTGTAGATGAAAAAGAAGAGGAAGTTAAGCACCGCTCCAAGAGAAGGCAAATGGAGAAGATCTCATACAGAAGCAACAGTGAGGTTGGATCAACCATAAACTCCAACAAAGCATATGCTCAATCATCTTCAAACAGAAGCATTGATTGTGCTGATGAAGCCTGA 3129 0.4257 MASLSLLSCFLPITQKLVFHTVACSAFPEFLWTFSASSFGSLFQWNRGRLVEVDLFIPKLDQASAINPWLCRYGLRGCCLTVLLSRVIISGLNFGNFQVPTMIGVWLVVLMIISNGISSNGAGMNASKVPDSVNIGALFSFNTTVGRIVKIAIEAAVKDVNSDPSILGKTKLKVSMQEDSKYRGFLSIAEALQLMSNHTVAIIGPQTSTTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFVRTAHSDLYQMTAIAELVDYYGWREVIALYVDDDHGRSGIGALGDKLAERRCKISFKAPLSPEPSREEITDVLVQVALAESRVIVLHTNAAWGPSVFGVAKYLGMMGTGYVWIATNFISTLLDTDSPLPSDAMANIQGVITLRVYTPDSELKRRFFSRWKNLTSGMTANGPLGLSTFGLYAYDTVYVLARALDTFFKQGNLITFSYDSKLSQLHGDSLHLDAVNIFNEGNLLRKSIYGVNMTGVTGPFKYTSDANLVHPAFEILNVIGTGSRRIGYWSNYSGLSVIPPAALYSRPANLSSANQKLLAVIWPGETTQKPRGWVFPNNGRHLRIGVPKRFSYREFVSQGPGTDLFKGFCIDVFLSAVNLLPYAVPYKFIPFGDGRSNPNNSELLRQIPAGVFDAAVGDLTITTERTKMVDFTQPFIESGLVVVAPVRKLESNAWAFLRPFTPMMWCVTGVFFLIVGAVVWILEHRLNDDFRGPPKKQVVTILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIVNSSYTASLTSILTVQQLSSPVKGIESLINSKEPVGYLQGSFSRNYLVEEVGIAESRLVPLKTEDDTAKALKNGPGKGGVAAYVDERAFTEIFLSSRCDFTTVGQEFTRNGWGFAFPRDSPLAVDLSTAILELSENGDLQRIHDKWLLSSACLSQGAKLEVDRLNLKAFWGLYLVCGLACLLALFIYLIQMMRQYNRHYSEELDTSSSNRSSGSSRLRTFLSFVDEKEEEVKHRSKRRQMEKISYRSNSEVGSTINSNKAYAQSSSNRSIDCADEA 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0730 1042 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 133 990 IPR015683 -
Glsi09g0730 1042 FunFam Glutamate receptor 684 814 - -
Glsi09g0730 1042 SUPERFAMILY Periplasmic binding protein-like I 129 565 IPR028082 -
Glsi09g0730 1042 PIRSF IGluLR_plant 100 1039 IPR017103 -
Glsi09g0730 1042 Pfam Receptor family ligand binding region 150 511 IPR001828 -
Glsi09g0730 1042 MobiDBLite consensus disorder prediction 995 1010 - -
Glsi09g0730 1042 MobiDBLite consensus disorder prediction 995 1042 - -
Glsi09g0730 1042 FunFam Glutamate receptor 249 400 - -
Glsi09g0730 1042 Pfam Bacterial extracellular solute-binding proteins, family 3 628 913 IPR001638 -
Glsi09g0730 1042 MobiDBLite consensus disorder prediction 1011 1036 - -
Glsi09g0730 1042 SUPERFAMILY Periplasmic binding protein-like II 548 915 - -
Glsi09g0730 1042 Gene3D - 249 526 - -
Glsi09g0730 1042 SMART GluR_14 574 915 IPR001320 GO:0015276|GO:0016020
Glsi09g0730 1042 FunFam Glutamate receptor 810 917 - -
Glsi09g0730 1042 Gene3D - 684 810 - -
Glsi09g0730 1042 Gene3D - 151 501 - -
Glsi09g0730 1042 Gene3D - 860 920 - -
Glsi09g0730 1042 FunFam Glutamate receptor 568 684 - -
Glsi09g0730 1042 Gene3D - 565 683 - -
Glsi09g0730 1042 Pfam Ligand-gated ion channel 914 946 IPR001320 GO:0015276|GO:0016020
Glsi09g0730 1042 CDD GluR_Plant 573 913 - -
Glsi09g0730 1042 CDD PBP1_GABAb_receptor_plant 134 530 IPR044440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0730 Glsi-ChrGlsi09 4996414 5001153 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0730 106 1016 Ion Channels AT3G51480 60.197 0.0 1172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1218 05 61736552 61741531 Glsi09g0730 09 4996414 5001153 CCT
Glsi09g0730 09 4996414 5001153 Glsi09g0730 09 4996414 5001153 ECH
Glsi09g0730 09 4996414 5001153 Glsi05g1218 05 61736552 61741531 ECH