Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0729 ATGATTAGCGGTGAAAATTTGGAGGCAGAAAAGTCAGAATTCCAACCCGGAGTGACCGTCGGATTGAGAATTAAAGGGAAGTACAAATCATTGGTGAATTTCCAAAACTTTGAAGCACAATACAGCATGAAGAAAGTTTGGCTTCTTGTGCTTTTGATCTTCTACTGTGCCTTTTCTTCAAACGGATTGCGTGCTGTTTCTACAACGCCCAGCACCGTTAACATTGGGGCTCTTATATCTTTCAACTCAACCATTGGAAAAGTGGCAAAAGTGGCTATAGAAGCGGCAGTTGATGATATAAACTCCAATCCAACGCTTCTCAATGGAACTAAGCTTAATATTTCAATGCAGGATACAAAATTCTCCACTGGATTTCTAGGCATCATTGATTCATTACTACTGATGGAGAAAGACACTGTAGCCATAATTGGCCCCCAGTACTCAGTTATGGCTCATGTAATTTCACACATAGCAAATGAGGTGCAAGTACCTTTGTTATCATTTGCGGCAACAGACCCCACCTTGTCTTCACTTCAGTTCCCATATTTTGTTAGGACAACACAAAGTGATATGTTTCAAATGGCCGCTGTGGCAGACATTGTTAACTACTATCAATGGAGAGATGTGATAGCCATTTTCGTCGATGATGATCATGGAAGAAATGGGATAGCTGCACTAGGGGATATGCTAGCTGAGAAACGTTGTAAGATCTCATATAAGGCACCCCTTAGACCTAATAATATAAAACCAGATGAGATAAATAGTGCCTTAGTTAAGGTCGCTTTAATGGAGTCTAGAGTTATAGTCCTCCACATATTCCCTGATTTTGGTCTAGATGTGCTCAGTGTGGCTCAGTCTCTTGGCATGATGGGAAATGGTTATGTGTGGATAGCCACTGATTGGCTTTCTACCAAACTAGATACTGATCCATCTGGATCTGCTTCATACATGAATGACATTCAAGGTGTTATCACCTTGAGAATGTACACACCAGATTCTGGAATTAAAAGAGATTTTGTTTCTAGGTGGAGTAACCTAACAAGGGAAAAGGCTGCGGATCAGGGTCTTTTTGGGTTGAACACCTATGGCCTATATGCCTATGACACTGTTTGGGTTCTTTCTTATGCACTTGATGCACTTTTCAAGAGTGGAGGAACTTTGTCATTTTCAAATGCTTCTCTAAACATGTTAAGAGGAGACAGCCTGCATCTGAATACTATAGGGGTCTTTGCTAATGGTAGTTTGTTGCTGGAAAAAACTTTAATGGTCAATAGAACTGGTTTAACAGGCCAAATGATGTTTAGTTCGGATGGGGAATTGATGCATCCTGCATATGAAGTTATTAATGTGATTGGCACTGGCATTAGGAAGATTGGGTATTGGTCCAATTCCTCTGGCCTCCACACTGGGGAAGCACTTAACCATTTCAATTCCAGTGAAGGACTTTATGGTGTCATCTGGCCTGGTCAAACGACTCTAACACCTCGTGGCTGGGTTTTCGCTAGCAATGGAAGGCATTTGAGAATTGGGGTTCCGCTTAGAATCAGTTACCGTGAATTCGTGTCAAAAATTGAGGGTTCTGAAATGTTTGGTGGCTATTGCGTTGACGTGTTTACTGCAGCACTGGACTTGTTGCCTTATCCAGTTCCTTACAAGTTTATTCCATTTGGTGATGGTCGAACTAACCCATTAAACTCAGAGCTTCTGCACATGATCACAACTGGTGCCTTTGATGCCGTGGTAGGCGACATTACCATAACCACAAGCAGGACAAAGATTGTGGATTTTACACAGCCATATATTGAATCTGGGCTAGTTGTTGTGGCCCCCATCAGGAAGTTGAACTCTAATGCTTGGGCTTTTCTAAGACCATTTACTCCGATGATGTGGTTTGTGACAGGAATGTTTTTCCTTGTTGTGGGAGCAGTTGTGTGGATTTTAGAGCGTCGGATTAACGATGATTTTAGGGGCCCTGCTAGAAGGCAGTTTGTCACCATTTTATGGTTTAGCTTTTCAACCCTGTTTTTTGCACATAGAGAGAAAACTGTCAGCACTCTTGGTCGCTTAGTGCTAATCATATGGCTATTTGTGGTTCTAATACTGAACTCCAGCTATATTGCAAGTCTAACCTCTATTCTTACAGTGGAACAGCTCTCTTCCCCAGTGAAGGGAATTGAAAGCTTAGTGACAAGCAACGAGCTCATTGGTTTCCTGCGGGGTTCATTTGCTGAAAATTATCTAACTGAGGAACTCAACATAGTCAAATCCAGGCTTGTCCCTCTCAATTCCCCATCAGAATATGAAAAAGCCTTAAAAGATGGGCCTACAAACGGAGGTATTGCTGCAATAATAGATGAGCGTGCATATATGGAGCTCTTCTTAGCAACCAGATGTGAATTCGGTATTGTTGGTCAAGAGTTCACCAAAATGGGATGGGGTTTTGCCTTTCAGAGGGACTCTCCCCTAGCCATTGACTTGTCGACTGCAATCTTAAAACTGTCCGAGAATGGTGATCTCCAAAGAATACATGACAAATGGCTAACAAGAAGTGCATGCAGCTCAGACGGTGCGAAGCAAGGCATAGACCGACTGGAGCTCAAGAGTTTCTGGGGTCTGTTCCTTCTATGCGGCATAGCATGCTTCATGGCTCTTCTTTGTTATGTTATTCGAATGGCCCACCGTTTCAGCAGGCACTCCAACCGTAACCTTGAAGACTCATCGCGCTCAGCTCGTCTCCGATCGTTCCTTTCCTTTGTGAATGAAAAGGAAGAGGAAGACAAAAACAGGCCAAAGAGGAGGCGAAAGGAAAGAATGTCTAGTAGAAGGGTAGTGCATGATAATTTGTCAATGGATGGCTCAAACGATAGTGTTATCCATATCGAAAATGATTGCCATGATGCTAACTAG 2907 0.4259 MISGENLEAEKSEFQPGVTVGLRIKGKYKSLVNFQNFEAQYSMKKVWLLVLLIFYCAFSSNGLRAVSTTPSTVNIGALISFNSTIGKVAKVAIEAAVDDINSNPTLLNGTKLNISMQDTKFSTGFLGIIDSLLLMEKDTVAIIGPQYSVMAHVISHIANEVQVPLLSFAATDPTLSSLQFPYFVRTTQSDMFQMAAVADIVNYYQWRDVIAIFVDDDHGRNGIAALGDMLAEKRCKISYKAPLRPNNIKPDEINSALVKVALMESRVIVLHIFPDFGLDVLSVAQSLGMMGNGYVWIATDWLSTKLDTDPSGSASYMNDIQGVITLRMYTPDSGIKRDFVSRWSNLTREKAADQGLFGLNTYGLYAYDTVWVLSYALDALFKSGGTLSFSNASLNMLRGDSLHLNTIGVFANGSLLLEKTLMVNRTGLTGQMMFSSDGELMHPAYEVINVIGTGIRKIGYWSNSSGLHTGEALNHFNSSEGLYGVIWPGQTTLTPRGWVFASNGRHLRIGVPLRISYREFVSKIEGSEMFGGYCVDVFTAALDLLPYPVPYKFIPFGDGRTNPLNSELLHMITTGAFDAVVGDITITTSRTKIVDFTQPYIESGLVVVAPIRKLNSNAWAFLRPFTPMMWFVTGMFFLVVGAVVWILERRINDDFRGPARRQFVTILWFSFSTLFFAHREKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPVKGIESLVTSNELIGFLRGSFAENYLTEELNIVKSRLVPLNSPSEYEKALKDGPTNGGIAAIIDERAYMELFLATRCEFGIVGQEFTKMGWGFAFQRDSPLAIDLSTAILKLSENGDLQRIHDKWLTRSACSSDGAKQGIDRLELKSFWGLFLLCGIACFMALLCYVIRMAHRFSRHSNRNLEDSSRSARLRSFLSFVNEKEEEDKNRPKRRRKERMSSRRVVHDNLSMDGSNDSVIHIENDCHDAN 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0729 968 CDD GluR_Plant 507 847 - -
Glsi09g0729 968 SMART GluR_14 508 849 IPR001320 GO:0015276|GO:0016020
Glsi09g0729 968 FunFam Glutamate receptor 502 618 - -
Glsi09g0729 968 Gene3D - 189 467 - -
Glsi09g0729 968 SUPERFAMILY Periplasmic binding protein-like I 69 498 IPR028082 -
Glsi09g0729 968 SUPERFAMILY Periplasmic binding protein-like II 483 849 - -
Glsi09g0729 968 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 147 175 - -
Glsi09g0729 968 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 366 378 - -
Glsi09g0729 968 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 86 102 - -
Glsi09g0729 968 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 73 923 IPR015683 -
Glsi09g0729 968 Pfam Bacterial extracellular solute-binding proteins, family 3 565 848 IPR001638 -
Glsi09g0729 968 MobiDBLite consensus disorder prediction 923 956 - -
Glsi09g0729 968 Gene3D - 762 854 - -
Glsi09g0729 968 PIRSF IGluLR_plant 41 965 IPR017103 -
Glsi09g0729 968 FunFam Glutamate receptor 744 851 - -
Glsi09g0729 968 Pfam Receptor family ligand binding region 91 452 IPR001828 -
Glsi09g0729 968 Gene3D - 503 617 - -
Glsi09g0729 968 Gene3D - 618 750 - -
Glsi09g0729 968 FunFam Glutamate receptor 189 349 - -
Glsi09g0729 968 Pfam Ligand-gated ion channel 849 880 IPR001320 GO:0015276|GO:0016020
Glsi09g0729 968 FunFam Glutamate receptor 618 748 - -
Glsi09g0729 968 CDD PBP1_GABAb_receptor_plant 74 467 IPR044440 -
Glsi09g0729 968 Gene3D - 91 442 - -
Glsi09g0729 968 SUPERFAMILY Voltage-gated potassium channels 629 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0729 Glsi-ChrGlsi09 4988622 4993086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0729 47 935 Ion Channels AT3G51480 59.066 0.0 1090