Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0726 ATGTCTTGCTCGTCGTCATCGGCTTCGGAGGATGAGGGTGAGGGCTTCCACTCCTACAGAAAAGGAGGTTACCACGCCGTTAGGGTTGCCGATCAGTTCGCCGGCGGCAGGTACATAGCACAGAGGAAGTTGGGTTGGGGTCAGTTTTCCACTGTGTGGCTCGCTTACGATACTCGCACTTCTACATATGTTGCACTCAAGATCCAGAAAAGTGCATCCCAGTTTGCTCAGGCTGCCCTTCATGAGATCAATGTTCTTTCGTCCATTGCTGATGGTGACCCTTCAAATTCGAAGTGTGTTGTCCAATTGATTGACCACTTTAAGCACACAGGCCCAAATGGGCAGCACCTTTGCATGGTCCTTGAGTTTCTTGGCGATAGCTTGCTTCGTCTGATCAAATACACCCGATACAAAGGCCTTCCACTGAATAAAGTTAGAGAAATTTGCAAATGCATTTTAACTGGTCTGGATTACTTGCATAGAGAACTTAATATAATCCACTCTGACCTAAAACCTGAAAACATTCTTCTCATTTCCACAATGGATCCTGCCAAAGATCCTGTTAGATCTGGACTAAGCCCTATTCTAGAGAGGCCTGAGGGAAGCATAAATAGTGGAGTTTCAAGTCTTATTGAGAAAAAGCTGAAAAGTAGAGCAAGGAGGGCAGTTGCTAGAATATCTGGAAGAACTTCAATGGGAGGAGCAGAAGAGGTTCCAAATCCCGATAGAAATGTTGATGGAATCGATGTGAAATGCAAGATAGTAGATTTTGGAAATGCATGCTGGGCAGATAAGAAGTTTGCAGAAGAGATCCAGACAAGGCAGTACAGAGCACCTGAAGTTATACTGCAGGCTGGGTATTCCGACTCTGTGGACATGTGGTCTTTCGCTTGCATTGCTTTTGAGCTTGCCACTGGTGATATGATGTTTACTCCCAAGACAGGACAAGGCTTTAGTGAGGATGAAGACCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATACCCCGGAAGGTTGCTATCGGTGGAGCAAAATCCAGGGATTACTTTGACAGGCATGGGGATCTAAAAAGAATTAGGAGGCTAAAATTCTGGCCACTCGACAAATTTTTGATTGATAAATATAAATTCTCAGAGAATGATGCTCGTGAGTTTTCAGAGTTTCTTGTACCTCTTCTGGATTTTTTACCAGAGAAGCGTCCAACTGCGCAGCAGTGCCTGCAACATCCATGGCTCAATGTCAAGAAGTCAACTCCAAGTAATGAGAAATTAATCTAG 1278 0.4476 MSCSSSSASEDEGEGFHSYRKGGYHAVRVADQFAGGRYIAQRKLGWGQFSTVWLAYDTRTSTYVALKIQKSASQFAQAALHEINVLSSIADGDPSNSKCVVQLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIKYTRYKGLPLNKVREICKCILTGLDYLHRELNIIHSDLKPENILLISTMDPAKDPVRSGLSPILERPEGSINSGVSSLIEKKLKSRARRAVARISGRTSMGGAEEVPNPDRNVDGIDVKCKIVDFGNACWADKKFAEEIQTRQYRAPEVILQAGYSDSVDMWSFACIAFELATGDMMFTPKTGQGFSEDEDHLALMMELLGKIPRKVAIGGAKSRDYFDRHGDLKRIRRLKFWPLDKFLIDKYKFSENDAREFSEFLVPLLDFLPEKRPTAQQCLQHPWLNVKKSTPSNEKLI 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0726 425 FunFam Protein kinase superfamily protein 24 123 - -
Glsi09g0726 425 SUPERFAMILY Protein kinase-like (PK-like) 32 413 IPR011009 -
Glsi09g0726 425 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0726 425 Pfam Protein kinase domain 251 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0726 425 ProSiteProfiles Protein kinase domain profile. 38 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0726 425 SMART serkin_6 38 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0726 425 Gene3D Transferase(Phosphotransferase) domain 1 92 412 - -
Glsi09g0726 425 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Glsi09g0726 425 CDD STKc_SRPK 27 412 - -
Glsi09g0726 425 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 240 418 - -
Glsi09g0726 425 FunFam Serine/threonine-protein kinase SRPK 117 412 - -
Glsi09g0726 425 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Glsi09g0726 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0726 Glsi-ChrGlsi09 4975005 4977918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0726 1 423 EF-hand Containing Proteins AT5G22840 52.697 5.67e-172 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Glsi09g0726 Pkinase 8.6e-23 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1224 05 61761579 61765735 Glsi09g0726 09 4975005 4977918 CCT