Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0722 ATGCCTAAAGCGAAATCTGACGCGAAAGCCGTCGATAACCGGTTGAAGCGCAAGGGCGCTGGAGCCGGGAGGAAGCAGTCGAAGAAAGCTGCAAAGGATCCAAACAAGCCAAAGAGGCCTCCGAGTGCTTTCTTTGTGTTTATGGCTGAGTTCAGAGAGCAATATAAAAAGGAGCATCCAAACAACAAATCCGTCGCTGCTGTCGGTAAAGCTGGCGGTAGTGGATGGAAATCATTGTCTGATGCTGAAAAAGCTCCCTATATTGCTAAGGCAGGGAAGAAGAAAGAGGAATACGAGAAAACTATTCAAGCCTACAATAGGAGATTGGCTGAGGGCAAAAATCCTTCAGAGGTAGAAGAGTCCGACAAGTCAAAGTCAGAAGTGAATGATGAAGATGATGATGATGAGGAGGAGGAAGATGATGATGAGTAA 432 0.463 MPKAKSDAKAVDNRLKRKGAGAGRKQSKKAAKDPNKPKRPPSAFFVFMAEFREQYKKEHPNNKSVAAVGKAGGSGWKSLSDAEKAPYIAKAGKKKEEYEKTIQAYNRRLAEGKNPSEVEESDKSKSEVNDEDDDDEEEEDDDE 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0722 143 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Glsi09g0722 143 SMART hmgende2 36 107 IPR009071 -
Glsi09g0722 143 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 142 IPR031061 -
Glsi09g0722 143 CDD HMG-box_AtHMGB1-like 38 98 - -
Glsi09g0722 143 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Glsi09g0722 143 Gene3D High mobility group box domain 21 121 IPR036910 -
Glsi09g0722 143 Coils Coil 88 108 - -
Glsi09g0722 143 MobiDBLite consensus disorder prediction 126 143 - -
Glsi09g0722 143 MobiDBLite consensus disorder prediction 1 19 - -
Glsi09g0722 143 MobiDBLite consensus disorder prediction 106 125 - -
Glsi09g0722 143 PRINTS High mobility group (HMG1/HMG2) protein signature 71 90 - -
Glsi09g0722 143 PRINTS High mobility group (HMG1/HMG2) protein signature 3 23 - -
Glsi09g0722 143 PRINTS High mobility group (HMG1/HMG2) protein signature 90 110 - -
Glsi09g0722 143 SUPERFAMILY HMG-box 25 107 IPR036910 -
Glsi09g0722 143 MobiDBLite consensus disorder prediction 1 43 - -
Glsi09g0722 143 MobiDBLite consensus disorder prediction 106 143 - -
Glsi09g0722 143 MobiDBLite consensus disorder prediction 55 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0722 Glsi-ChrGlsi09 4953104 4954243 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Glsi09g0722 HMG_box 3.7e-23 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g0722 09 4953104 4954243 Glsi09g0722 09 4953104 4954243 ECH