Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0717 ATGGGTCTTTGCTTTGGTTCTCTCGTTCGCCGCCGACAAGAGAATGGCGTCAATAGACCTCAATATTCAGGTTCAGCGAGTCTTGACAGTAAGAACGTTGGCACTTCTGCTACAGACAGCACCGCCGAAAAGAGCCAATTTTCGATAATTGCAAATGGAAGCATTGACGAGTACCTTTCTTCTCCTAGTGAGCAAATTTTAGAAACGCCTAACTTGAAGATCTTCAGTTTTGTGGACTTGAAAGCAGCTACCAAGAACTTCAAATCAGACACATTGCTTGGCGAGGGGGGTTTTGGTAAAGTTTACAAAGGTTGGTTGGATGAGAAGACGCTTATGCCGGTTAAAGCGGGTTCTGGAATGCCGGTCGCTATCAAAAGACTGAACCCTGAGAGTATGCAAGGTTTCGAAGAGTGGAAGTCAGAAGTCAACTTTTTAGGAACCCTTTCTCACCCCAACCTGGTCAAGTTACTGGGTTACTGTTTTGACGATGAGGAGCTTCTCCTTGTGTATGAGTTCATGCCAAAGGGAAGCTTGGAGAATCATCTTTTCAGAAGTGACATAGAACCACTTTCTTGGAACGAGCGACTTAAAATAGCTATTGGTGCAGCTCAGGGCCTATCGTTCCTGCATAGTTCAGAAAAGAAAGTCATATACAGAGATTTCAAGGCCTCAAATATACTACTTGATGGGAATTATGCAAAAATTTCTGATTTTGGATTGGCTAAATTGGGGCCTGCTGGGGGAGAATCACATGTGACTACCAGGATCATTGGCACGTATGGCTATGCTGCTCCAGAATACATTGCAACAGGCCACTTGTATGTGAAGAGTGATGTGTATGGATTTGGTGTAGTGCTGCTTGAAATACTGACAGGTTTGCGGGCACTTGATCCAAGGCGCCCTACCGGGCAGCAAAACCTGGTTGAATGGGTTAAGCCACGCCTCTCTGATAAAAGAAAGTTGAAAGGCATTATGGATGCCAAGATAGAGGGCCAATATTCACTAAAGGCAGCATCACAAGCAGCTCAGCTCGCTCTAGAATGCTTACAACCCGAGCCCAAAAACCGCCCTTCTATGAAAGAGGTAGTGGAGGCATTGGTAGGCATTGAAGTTATCCAGGGCAAATCGAAAGAATCCAAGAAACGCGGTTCTCAATCTACACCTCTTCATCCTCGAAAGCCCATTAATCACCAATCTCTACGTCAAATGAAGGTTAATTAG 1221 0.4496 MGLCFGSLVRRRQENGVNRPQYSGSASLDSKNVGTSATDSTAEKSQFSIIANGSIDEYLSSPSEQILETPNLKIFSFVDLKAATKNFKSDTLLGEGGFGKVYKGWLDEKTLMPVKAGSGMPVAIKRLNPESMQGFEEWKSEVNFLGTLSHPNLVKLLGYCFDDEELLLVYEFMPKGSLENHLFRSDIEPLSWNERLKIAIGAAQGLSFLHSSEKKVIYRDFKASNILLDGNYAKISDFGLAKLGPAGGESHVTTRIIGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTGLRALDPRRPTGQQNLVEWVKPRLSDKRKLKGIMDAKIEGQYSLKAASQAAQLALECLQPEPKNRPSMKEVVEALVGIEVIQGKSKESKKRGSQSTPLHPRKPINHQSLRQMKVN 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0717 406 ProSitePatterns Protein kinases ATP-binding region signature. 93 125 IPR017441 GO:0005524
Glsi09g0717 406 Gene3D Transferase(Phosphotransferase) domain 1 173 388 - -
Glsi09g0717 406 MobiDBLite consensus disorder prediction 16 39 - -
Glsi09g0717 406 MobiDBLite consensus disorder prediction 389 406 - -
Glsi09g0717 406 PANTHER OS01G0588500 PROTEIN-RELATED 45 367 - -
Glsi09g0717 406 FunFam Serine/threonine-protein kinase BIK1 55 172 - -
Glsi09g0717 406 CDD STKc_IRAK 93 369 - -
Glsi09g0717 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Glsi09g0717 406 MobiDBLite consensus disorder prediction 374 406 - -
Glsi09g0717 406 SUPERFAMILY Protein kinase-like (PK-like) 62 367 IPR011009 -
Glsi09g0717 406 Gene3D Phosphorylase Kinase; domain 1 63 172 - -
Glsi09g0717 406 ProSiteProfiles Protein kinase domain profile. 87 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0717 406 Pfam Protein tyrosine and serine/threonine kinase 90 366 IPR001245 GO:0004672|GO:0006468
Glsi09g0717 406 FunFam Serine/threonine-protein kinase PBS1 173 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0717 Glsi-ChrGlsi09 4927000 4930179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0717 73 366 Glycoside Hydrolase AT3G07070 52.013 7.32e-99 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi09g0717 PK_Tyr_Ser-Thr 3.3e-49 CL0016