Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0711 ATGGTTGAATACTTGAATCGGAGTTTATTAAGGAAGAAAAATCAGATTAGCAGAGCGGACGAGCTCGAGCGTTAAGAGAAGAAGTTGCAAAGAAGAGATATACTAAAAGCCTCCTCCCGTGTTTGGGTGAGGGACAACATGGGAGGTGACAGTGTTGTTGTTGATCCTACGGAATCGAAGGGCACTGACGGAGTGATCATCAACATTCGATGCTCCAATGGTTCGAAGTTTTCGGTTCAGATTAGTCTCGAATCCACCATCGGATTGTTCAAGGAAGTTGTCGCTCAGAATTGCGATATCCGAGCCGATCAACAGCGACTGATTTATAAGGGCCGGATCTTAAAGGATGATCAAACCCTGCAAAGCTACGGTTTGGAGGCAGATCACACTATCCATTTAGTTCGTGGCTTTGCACCAGCTGCACCAACCAATACAACTGGAGGGACCAATACCACAACAAATAATTTGAGAGGTTTTGGTGCTAATGAAGGTGGAGGTTTAGGAGGGTCTGGTGTTGGGGCTTCATTGTTTCTTGGACTAGGCTTCAATGGGACTGGGGGAAATGGCATCAATGGCTTATTTGGAGCAGGCCTCCCAAATCTTGAACAAATGCAGCAACCACTTATTTCGAATCCCAATTTAGTGAGAGAAATAACAAACTCACCTGCTATGCAGAATCTAATAAATAATCCTGAGATAATGCGGAATCTTATAATGGGCAACCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGCTAGCACACATACTAAATGATCCCAACACTCTCCGCCAGACACTTGAAGCTACAAGAAACCCTGAGATCATGCGTGAGATGATGAGAAATACAGACCGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTTAACATGCTCAGGCGGATGTATGAAAATGTTCAGGAACCATTCCTAAATGCCACAATAATGGCTGGTAATGCAGGAAGTGATAACTCTAATAACCCGTTTGCAGCATTGTCTGGGACTCAAGGTGGCCAAGCCAGGGATCGATCAACTAATCCCTTAACTACTAGTTCTGAAGCAACTGCTGGTTCCCCTGTCCCCAATAGTAGCCCACTTCCTAATCCTTGGATTGCTGGAACTGGAGGTGCCCAAAATAACACTGCAAGGTCAACTACTGGAGGGAATGCTAGGCTGCAGGCACCCACTGGCTTAGGAGGACCTGGCCTCCCAGATCTTGAAGGCATTTTGGGTGCTATGCCAGACGCCTCTTTATTGACCCAGTTAATGCAAAACCCAGCTATTTCACAAATGATGCAAAGTATCGTTTCCAACCCACAGGCTATGAATCAGCAACTCTTGTCTTTCCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACAATCAACACTGGAATCAGGTCAAACTGGCAGAGGCACTGGATCAATGAACAACTTGGGGTTGGAGATGTTGTCGAGTATGTTTGGTGGACTTGGAGCTGGTAACCTAGCTGCTCCTAACAGATCAGATGAGCCACCAGAGCAATTGTATGCCAGCCAGCTATTGCAGCTTCAAGAGATGGGCTTCTCCGACACGCAAGAAAACATAAGGGCTCTTATTGCCACTTCAGGTAATGTTCATGCAGCGGTTGAACGGCTTTTGGGGAACCCCAGTCAGTAG 1665 0.4637 MVEYLNRSLLRKKNQISRADELERXEKKLQRRDILKASSRVWVRDNMGGDSVVVDPTESKGTDGVIINIRCSNGSKFSVQISLESTIGLFKEVVAQNCDIRADQQRLIYKGRILKDDQTLQSYGLEADHTIHLVRGFAPAAPTNTTGGTNTTTNNLRGFGANEGGGLGGSGVGASLFLGLGFNGTGGNGINGLFGAGLPNLEQMQQPLISNPNLVREITNSPAMQNLINNPEIMRNLIMGNPQMQELMDRNPELAHILNDPNTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATIMAGNAGSDNSNNPFAALSGTQGGQARDRSTNPLTTSSEATAGSPVPNSSPLPNPWIAGTGGAQNNTARSTTGGNARLQAPTGLGGPGLPDLEGILGAMPDASLLTQLMQNPAISQMMQSIVSNPQAMNQQLLSFQQALLSQLGQQQSTLESGQTGRGTGSMNNLGLEMLSSMFGGLGAGNLAAPNRSDEPPEQLYASQLLQLQEMGFSDTQENIRALIATSGNVHAAVERLLGNPSQ 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0711 554 Coils Coil 26 32 - -
Glsi09g0711 554 ProSiteProfiles Ubiquitin domain profile. 65 134 IPR000626 GO:0005515
Glsi09g0711 554 Gene3D - 236 294 - -
Glsi09g0711 554 Coils Coil 12 24 - -
Glsi09g0711 554 FunFam Ubiquitin domain-containing protein DSK2b 238 294 - -
Glsi09g0711 554 MobiDBLite consensus disorder prediction 319 394 - -
Glsi09g0711 554 SUPERFAMILY Ubiquitin-like 54 151 IPR029071 -
Glsi09g0711 554 Pfam UBA/TS-N domain 512 548 IPR015940 -
Glsi09g0711 554 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 506 551 IPR015940 -
Glsi09g0711 554 PANTHER UBIQUILIN 65 549 IPR015496 -
Glsi09g0711 554 FunFam Ubiquitin domain-containing protein DSK2b 62 149 - -
Glsi09g0711 554 CDD Ubl_Dsk2p_like 67 137 - -
Glsi09g0711 554 SUPERFAMILY UBA-like 508 550 IPR009060 GO:0005515
Glsi09g0711 554 FunFam Ubiquitin domain-containing protein DSK2b 495 553 - -
Glsi09g0711 554 CDD UBA_PLICs 512 550 - -
Glsi09g0711 554 Gene3D - 55 148 - -
Glsi09g0711 554 SMART CBM 187 228 IPR006636 -
Glsi09g0711 554 SMART CBM 405 447 IPR006636 -
Glsi09g0711 554 SMART CBM 241 280 IPR006636 -
Glsi09g0711 554 SMART ubq_7 65 136 IPR000626 GO:0005515
Glsi09g0711 554 Pfam Ubiquitin family 67 134 IPR000626 GO:0005515
Glsi09g0711 554 SMART uba_6 512 550 IPR015940 -
Glsi09g0711 554 MobiDBLite consensus disorder prediction 318 408 - -
Glsi09g0711 554 Gene3D - 494 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0711 Glsi-ChrGlsi09 4891273 4897909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0711 67 134 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 32.353 3.78e-06 45.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1250 05 61957609 61962876 Glsi09g0711 09 4891273 4897909 CCT
Glsi09g0711 09 4891273 4897909 Glsi09g0711 09 4891273 4897909 ECH