Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0686 ATGGAGTTTGTGACAAATCCATCCCCTTTGCCTTCCACTTTTTTAAGTTCTTTCGGGAATTTTGTTGAAAGAGTTAAACAGATTTGCAGTCTCGTGGTTTCTGCAATAATTGGGAACATCTTCTCTGCGATCTTTACATTCTGCTTTGCTTTAGTGGGCACTTTTTTGGGTGCTATGACTGGAGCTTTGATTGGCCAAGAGACTGAAAGTGGCTTCATTCGAGGGGCTGCTGTAGGAGCTATATCAGGAGCTGTTTTTTCCATTGAAGTATTTGAATCTTCTCTTGTTCTTTGGCAATCTGACGAATCTGGGATTGGGTGTCTCTTATACTTGATTGATGTTATTGCTAGTCTTCTGAATGGGAGACTTGTTCGTGAGAGGATAGGTCCAGCCATGTTAAGTGCTGTCCAAAGTCAGATGGGTGCTGTTGAAACAAGCTTTGATGAGATTCAAAACATCTTTGACACTGGAGATGCCAAAGGTTTATCAGGAGATTCAGTTGAAAAAATCCCAAAAATCACAATTACAACTGACAACAATGTTGATGCTTCTGGTGACAGAGTTTCCTGTTCAGTTTGCCTCCAGGACTTCCAGCTTGGAGAGACAGGTAGAAGCCTGCCTCATTGTCATCACATTTTTCATCTACCTTGTATAGACAAGTGGCTCTTCAGGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGCTATGTAAGGTCGATCAAAGAGTGAAGCTAGAAAAAAGTGGTATTGCAGACTTTGTTCTTTGGGAAGGAGAACATTATTATAAGGTTGCAATGGTTGATTGGCACCGCGGGTTGGTGGTGGCTTCACCGCCAGCATTAGCAATACCATTTTTGAAAAATGGGAGTTCATCTGCTCATAACATGATGGTGGGATTTGTTGCAGGCCTTTTCACAGTAATGGCATTGGCCTTGTTATACTGCCTCTTCAAGAGAAAGTCCATTCCTTTTCTTAAAAAGGTGAGCTGCACTTGAAAAGAGAATATAAGTTTGGAATATGACAAAATTTCAGTAAGGCGTTTTCACTTGGAGGAGATAGAGAAGGCTACCAATAATTTTAGCCAAGAATGCTTGGCGGGTTCTGGAGCATTTGGAAATGTCTACAAGGGAGCCTTTGACATAGAAGGGACGTTAGCCATTAAGAGAGCTCATTGTGATTCATCGTCGAGTGCCGAGGAATTCAGAAATGAAGTTAGGCTCCTTTCAAAGGTAAAGCACAGGAATCTTGTTGGTCTGGTGGGATATTGTGAAGAATCTGGGCCAACTGGGGATCAATCCCACGTCAGTAGCCAAATCAAAGGCACACCAGGGTACCTTGACCCTGCCTACTGTGCAAGCTTCCATTTGACCGCTTTCAGCGACGTTTACAGCTTCGGAGTCATACTCTTGCAGCCTGTTTCAGCCAGACCTGCTGTTGATACTACCCAAAACCAAAGTGGTTATCATATTATTGACTGGGCAAGGCCTAGCTTAGAGAGGGGTAACGTTGAAGAAATTATAGATGCAAATCTACTAACTGAGCCATGCAACATGAAAATTATGCTGAAGATGGGGCAAATAGCACTAAAATGCGTGGTTCAAGTGCCAAAATATCGTCCTACAATGACCCAGGTGTGTCAAGAACTAGAAGAAGCGCTCTATTCAGAGCCTTGA 1674 0.4295 MEFVTNPSPLPSTFLSSFGNFVERVKQICSLVVSAIIGNIFSAIFTFCFALVGTFLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLNGRLVRERIGPAMLSAVQSQMGAVETSFDEIQNIFDTGDAKGLSGDSVEKIPKITITTDNNVDASGDRVSCSVCLQDFQLGETGRSLPHCHHIFHLPCIDKWLFRHGSCPLCRRDLLCKVDQRVKLEKSGIADFVLWEGEHYYKVAMVDWHRGLVVASPPALAIPFLKNGSSSAHNMMVGFVAGLFTVMALALLYCLFKRKSIPFLKKVSCTXKENISLEYDKISVRRFHLEEIEKATNNFSQECLAGSGAFGNVYKGAFDIEGTLAIKRAHCDSSSSAEEFRNEVRLLSKVKHRNLVGLVGYCEESGPTGDQSHVSSQIKGTPGYLDPAYCASFHLTAFSDVYSFGVILLQPVSARPAVDTTQNQSGYHIIDWARPSLERGNVEEIIDANLLTEPCNMKIMLKMGQIALKCVVQVPKYRPTMTQVCQELEEALYSEP 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0686 557 SUPERFAMILY RING/U-box 179 238 - -
Glsi09g0686 557 FunFam NEP1-interacting protein-like 1 150 235 - -
Glsi09g0686 557 SMART ring_2 190 231 IPR001841 -
Glsi09g0686 557 CDD RING-H2_NIPL1-like 189 232 - -
Glsi09g0686 557 SUPERFAMILY Protein kinase-like (PK-like) 344 547 IPR011009 -
Glsi09g0686 557 Gene3D Phosphorylase Kinase; domain 1 324 427 - -
Glsi09g0686 557 Pfam Protein tyrosine and serine/threonine kinase 367 428 IPR001245 GO:0004672|GO:0006468
Glsi09g0686 557 Pfam Ring finger domain 189 232 IPR001841 -
Glsi09g0686 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 237 IPR013083 -
Glsi09g0686 557 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Glsi09g0686 557 FunFam Putative LRR receptor-like serine/threonine-protein kinase 326 429 - -
Glsi09g0686 557 Gene3D Transferase(Phosphotransferase) domain 1 428 556 - -
Glsi09g0686 557 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 234 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0686 Glsi-ChrGlsi09 4734639 4740795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0686 22 235 C3H Transcription Factor Family AT5G66070 76.636 3.20e-113 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Glsi09g0686 PK_Tyr_Ser-Thr 3.4e-08 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1298 05 62260631 62262119 Glsi09g0686 09 4734639 4740795 CCT