Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0680 ATGGCGGACAATGGGGTCATCTATCTTCACGGTGACTTGGACTTGACAATCATTGAGGCTCGAAGGTTGCCCAACATGGATCTTGTCTCCGAGCATTTCCGCCGTTGTATCACCGCTTGTGACACCGTCAAATTCCACTCCTCCGACTCAGGCGACGGCAGCAACCGCAAAATCCACCAGAAACACCGGAGGATTATTACAAGCGACGCATATGTCACCGTTTACTTGCCGCAAGCAACCGTTGCCCGCACACGGGTGATAAAGAATTTACAGAATCCTCAGTGGAAGGAGCGCTTCAATATCCCCTTGGCACACCCAGCGGTGGATTTGGAATTTCGGGTTAAAGATGATGATGTGTTTGGTGCTCAGCTTGTAGGAACTGTTAAGATTCCTGCAAAAAGGATTGCCTCCGGCGAGTTTATAACCGGGTGGTTCCCAATTATTGGATCCTCTGGTAAGCCACACAAGCCCGACACCGCACTTCATCTTGAAATGAAGTTCATACCTGTTCAAGAGAACCCGCTGTACCAGAGCGGCATTGCGGCTGATCCGGAGCACAAGGGTGTGAGGCACACGTATTTTCCAGTGCGGAAAGGAAGCTCCGTGAGATTGTACCAAGATGCCCATGTTCCTGATGGGATTCTACCTGAAATTAAGCTAGAGGGAGGAGAGGTTTACAAGCATGGAAAGTGTTGGGAAGATATTTGTTACGCTATATCCGAGGCTCATCATATGGTTTATCTTGTGGGATGGTCAATCTACCACAAAGTGAAGATTATTAGGGAACCCAGCAGGCCTTTGCCACGAGGTGGGAATTTGACTCTTGGTGAATTGCTCAAGTACAAGTCTGAAGAAGGGGTGCGAGTTCTGTTGCTGGTCTGGGATGATAAGACTTCCCACGACAAATTATTCATAAAGTCGGCTGGAGTAATGCAGACACGCGATGAAGAAACCAGGAAGTTTTTTAAACATTCTTCTGTAATGTGTGTTCTAGCACCTCGTTATGCTAGCAGCAAGTTGAGTTATATGAAGCAACAGGTTATTGGAACCATTTTCACGCATCACCAAAAATGTGTTATTGTGGACACACAGGCTTATGGTAATAACCGTAAGATAACTGCATTTTTAGGAGGCCTTGATCTATGTGATGGTCGCTATGACACGCCTGAGCATAGACTTTTTCGTGATCTTGATACTGTATTTTCGGGTGATTTTCACAATCCTACATTTTCAGCTGGAACAAAAGCTCCAAGGCAACCATGGCATGATTTGCACTGCAGAGTAGATGGGCCTGCTGCATATGATGTTCTTATTAATTTTGAGCAGCGTTGGAGAAAAGCAACTAAGTGGAAAGAATTTGGCATACTTTTCAAAAGAGCTTCTCATTGGCATGATGATGCTTTACTAAAAATAGAACGCATCTCATGGATATTAAGTCCTTCCTTGTCTCCCTCAAAGGATGGTATTGCAATTGTTCCAGGGGATGACCCTTCAGTAAGGGTTTACAGTGAAGATGATCCTGAAAACTGGCATGTTCAGATATTCCGCTCCATTGATTCAGGATCCCTGAAAGGATTTCCCAAAAATGTTGATGTTGCTCAGTCCCAGAATCTTACCAGTGCTAAAAATTTGGTAATAGATAAAAGCATTCAAACAGGATACATTCAGGCGATCAGATCTGCTCAACACTTCATCTACATTGAAAACCAATATTTTCTTGGATCATCATATGCTTGGCCATCTTATAAAGATGCAGGGGCTGATAATCTCATTCCAATGGAATTGGCACTGAAAATCGCTAGTAAAATTAGAGCCAAGGAGAGATTTGCGGTGTATATTGTTTTACCAATGTGGCCAGAGGGTGATCCTAATTCAGCAGCTATGCAAGAAATTCTCTTTTGGCAGGGCCAGACAATGCAAATGATGTATGATGTCGTTGCAAGAGAATTGAAATCAATGAAACTTGAGGACTTGCACCCACAAGATTACCTCAACTTCTATTGCCTTGGTAAACGGGAAGAATTCAATGAAGAAAGCCTAAGTTCAATTGATGCTCCGGTCTCTAGTTCGCATAAATATCGCCGATTTATGATTTATGTGCATGCTAAGGGGATGATCATCGATGATGAGTATGTTGTAGTGGGATCTGCTAATATAAATCAAAGATCTATGGATGGTACAAAAGATACTGAGATCGCTATGGGTGCTTATCAACCCCATCACACTTGGTCTGTGAGGAAAAGGCATCCATATGGTCAGATTTATGGTTACCGAATGTCACTGTGGGGGGAGCATCTTGGGATGTTAGAAGCAACTTTTGAGGAACCGGAGAGTTTGGAATGTGTTCATAAGGTGAATGCTATTGCCGAAGACAATTGGAGAAGATACACTTCCGAGAACTTCTCGTTGCTGCAGGGACATATTCTCAAGTATCCTGTACAGGTAGACGCTGATGGGAAGGTTAGCCCCCTACCTGAACACGAGAATTTCGTCGATGTTGGTGGTAAGCTACTGGGGACTCATTCCCAAACAATTCCAGATATCCTAACGACATAA 2556 0.439 MADNGVIYLHGDLDLTIIEARRLPNMDLVSEHFRRCITACDTVKFHSSDSGDGSNRKIHQKHRRIITSDAYVTVYLPQATVARTRVIKNLQNPQWKERFNIPLAHPAVDLEFRVKDDDVFGAQLVGTVKIPAKRIASGEFITGWFPIIGSSGKPHKPDTALHLEMKFIPVQENPLYQSGIAADPEHKGVRHTYFPVRKGSSVRLYQDAHVPDGILPEIKLEGGEVYKHGKCWEDICYAISEAHHMVYLVGWSIYHKVKIIREPSRPLPRGGNLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLFIKSAGVMQTRDEETRKFFKHSSVMCVLAPRYASSKLSYMKQQVIGTIFTHHQKCVIVDTQAYGNNRKITAFLGGLDLCDGRYDTPEHRLFRDLDTVFSGDFHNPTFSAGTKAPRQPWHDLHCRVDGPAAYDVLINFEQRWRKATKWKEFGILFKRASHWHDDALLKIERISWILSPSLSPSKDGIAIVPGDDPSVRVYSEDDPENWHVQIFRSIDSGSLKGFPKNVDVAQSQNLTSAKNLVIDKSIQTGYIQAIRSAQHFIYIENQYFLGSSYAWPSYKDAGADNLIPMELALKIASKIRAKERFAVYIVLPMWPEGDPNSAAMQEILFWQGQTMQMMYDVVARELKSMKLEDLHPQDYLNFYCLGKREEFNEESLSSIDAPVSSSHKYRRFMIYVHAKGMIIDDEYVVVGSANINQRSMDGTKDTEIAMGAYQPHHTWSVRKRHPYGQIYGYRMSLWGEHLGMLEATFEEPESLECVHKVNAIAEDNWRRYTSENFSLLQGHILKYPVQVDADGKVSPLPEHENFVDVGGKLLGTHSQTIPDILTT 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0680 851 SMART C2_3c 12 144 IPR000008 -
Glsi09g0680 851 Gene3D C2 domain 10 178 IPR035892 -
Glsi09g0680 851 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 9 172 IPR035892 -
Glsi09g0680 851 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
Glsi09g0680 851 CDD C2_plant_PLD 5 168 - -
Glsi09g0680 851 SMART pld_4 350 385 IPR001736 GO:0003824
Glsi09g0680 851 SMART pld_4 696 723 IPR001736 GO:0003824
Glsi09g0680 851 Pfam Phospholipase D Active site motif 351 385 IPR001736 GO:0003824
Glsi09g0680 851 FunFam Phospholipase D delta 222 466 - -
Glsi09g0680 851 Pfam Phospholipase D C terminal 771 840 IPR024632 -
Glsi09g0680 851 SUPERFAMILY Phospholipase D/nuclease 192 455 - -
Glsi09g0680 851 Gene3D Endonuclease Chain A 515 747 - -
Glsi09g0680 851 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 350 385 IPR001736 GO:0003824
Glsi09g0680 851 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 696 723 IPR001736 GO:0003824
Glsi09g0680 851 PANTHER PHOSPHOLIPASE D 5 839 IPR015679 -
Glsi09g0680 851 Pfam PLD-like domain 555 732 IPR025202 -
Glsi09g0680 851 Pfam C2 domain 11 147 IPR000008 -
Glsi09g0680 851 Gene3D Endonuclease Chain A 221 464 - -
Glsi09g0680 851 SUPERFAMILY Phospholipase D/nuclease 545 780 - -
Glsi09g0680 851 PIRSF PLD_plant 1 851 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0680 Glsi-ChrGlsi09 4688018 4694199 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0680 6 678 Phospholipase D Gene Family (Wang group) AT4G35790 71.471 0.0 1034