Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0669 ATGACTCTGAGAAGCATGGTATCCCTTGTCTTCAATTTGATTGGTCTTGCAGAGGGGCCAAGGAGCAAGGACCCTCCTTCACCTTTCCAATTATCCAGCACCATTGTAGACCCACACAACATCAAGCAGGAGCCATCTGAATCTGCAGCAGCAGCACCAAGTTTTATTGAGAGTATTGAAGGTGGTTGGTGCTGCGTGTGCTTGTCAAGGCTAAAGGAGAAAGATGAGATGCGGGTTCTTCCTTGCTTGCACAAGTTCCATAAGCTTTGTGTTGATAGATGGCTTAAGGGACGCCACAAAACCTGCCCACTCTGCCGCTTCTCAATGGGAGCTGAGGAAAAGTGTCATTCTGCCGAACCCTTCACTGAAGAGATGGTAATATGGTTCTCTTCTTTCCATATTGCTGGTATTTGA 414 0.471 MTLRSMVSLVFNLIGLAEGPRSKDPPSPFQLSSTIVDPHNIKQEPSESAAAAPSFIESIEGGWCCVCLSRLKEKDEMRVLPCLHKFHKLCVDRWLKGRHKTCPLCRFSMGAEEKCHSAEPFTEEMVIWFSSFHIAGI 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0669 137 Pfam Ring finger domain 64 106 IPR001841 -
Glsi09g0669 137 SUPERFAMILY RING/U-box 58 110 - -
Glsi09g0669 137 ProSiteProfiles Zinc finger RING-type profile. 64 106 IPR001841 -
Glsi09g0669 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 113 IPR013083 -
Glsi09g0669 137 PANTHER TARGET OF ERK KINASE MPK-1 44 113 - -
Glsi09g0669 137 SMART ring_2 64 105 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0669 Glsi-ChrGlsi09 4638143 4638556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0669 61 109 C3H Transcription Factor Family AT1G14200 51.020 1.19e-12 60.1