Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0655 ATGGCAGCAGAACATAAAGACAAAACCTCTTCTGAAAGTTCTGTATGTTCACCAGGTTCAAGCTCTGGTATGATTACCAAGTTCAGACTCGTGTTTGATAGATTATGGGGTTTTGCCACTTCTTGGAAGAAAAGAAGCACACCCCATGGTCGAAGAATTTTCCACAGAGATGTAGAAAAAGAAGAGTTCCAGTATGCCAGTACCCAGTGTCTCTCATCGTACTACAGTGTGTTTGTGGTTCGCCTAGCAATCATGGTCATGCTAGCCATCTTGATTGGGCTTCTCACCTTACTAACTTGGCATTTCACAAAGATTTACACAAAAAAATCACTTGAGAGCTTAGCATATGGCCTTCGTTATGAGCTTCTACAACGTCCCATCTTACGGATGTGGAATATTTTGAATTCTACTGCTGAAATTACAACAGCTCAAGTCAAGCTGTCTGAGTATGTAATCAGACGGTACAGCAACCCTGCCACTCAAGCGGAACAAGTTGAGCTGTATGAAGCAATGAAAGCGGTAACCTGGGCATTGTTTGCAAGTAGCAAAGCTCTCAATTCAATAACTATCAATTATAGAAACGGATTTGTTCAGGCATTCCATAGGGATCTGAAGGGTAACAACACATTCTACATCTACTCTGATCTTGCAAATTACTCCATAGGTGCTGGTAGCTCTAATGAAATCAATTTACTCTCAACACATCAAGCTTGGAATGATAATGCCATCCACGGTAACCATTCTGCTATATGGTATCGTGAACCACTTAATCCTGTGAGTGGAGATAAGATTGGGAAAGCTAAGCAAATTGCACCAGAAGACCTGATCAATATCGCTGGCATTTCCCAAGTACCCGACGGAGCAGCTTCATGGCACGTTGCAGTGAGCAAGTTTACAGATTCACCATTGCTTTCAGCAGCACTGCCAGTTTGGGACTCTTCTAATAAGAGCATTGTGGCTGTTGTGGGAGTCACAACTGCTCTTTATAGTGTAGGCCAACTAATGAAAGAACTAGTAGAGTTTCATAGTGGTCATATGTATTTGACCTCCCAAGAGGGTTACTTGCTGGCCACTTCCACTAACGAACCTCTGCTGATGAACTCAACAAAGCCTCCCAAGCTTAAGATGCCTGTTGACTGTGAAGATGATGTAATAAGGTTGGGAGCTGAGTGGTTACAGAGAACCTATGGGAACAACTTTCCTCCAAGTCATGAGGTTCATATTGAGAATGCCTGGCTAGGCCACCAGCAATATTACATTGACTCATTCTTCCTCAAGTTGAAGAGACTTCCTCTGGTGGGAGTTATCATTATACCAAGAAAGTATATCATGGGAAAGGTAGATGAAAGAGCCTTCAAAACGTTGGTTATTCTGATATCAGCATCGTTATGTATATTCGTCATTGGATGTGTTTGCATTTTGATACTGACAAATGGGGTATCAAAGGAAATGAAACTAAGAGCCGAACTTATCAGTCATCTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGTAACTTTAAAAGTCAGTTTCTTGCAAACATGAGTCATGAACTGAGGACCCCTATGGCAGCAGTGATTGGGTTGCTTGACATTCTTATGTCTGATGATTGTCTCACAAATGAACAATATGCAACAGTCACTCAGATACGAAAATGCTCAACTGCCCTACTCCGTCTTCTTAACAACATACTGGATCTGAGCAAGGTGGAATCTGGAAAACTGGTGCTAGAAGATGAAGAATTTGACTTGGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAGTGCATTAACCACAATGTAGAGACGGTTTTAGACCTGTCTGATGATATGCCAAAGGTAGTTCGGGGCGATTCTGCTCGGGTAGTTCAAATTTTTGCAAATCTGATCAGCAATTCCATTAAGTTTACTCCATCGGGTCACATTATTCTGCGAGGATGGTGTGAGAACCCAAATTCTTGCGCTGATAGTGCAAATTTTCCTCTTGATCAGAAGAAATCACGGACTGCACAAAAGATTAAAGCAAAGCACCATGAAAACCACCTAAAGAAGACATCCAAGAAAGATAACAAAATGATTCTTTGGTTTGAAGTTGATGACACAGGCACAGGTATTGATCCAAGTAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCAGATCCCTCAACTACTAGACTGCATGGAGGCACTGGTCTTGGACTTTGCATTGTCAGAACCTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTGTCAAAAAGGAGGGCCCAGGAACTCTGATGCGATTATACCTGCTTCTCAGTGCACCCATGGATGCCTCTGAACAACACTGTCGGTTAGATTATGCAAACAATGGCTTAGTGGTATTACTTGCACTCCCTGACAATATGGGTCGATTAATCACATCTAAGTGGTTACACAAAAATGGGGTTTGCACCGCAGAGGCATCTGAATGGAATGGACTAACACAAATTCTGAGAGAACTCTTTCATGCAAGAAGTTCAGTCCATAACAATGGCTTTGATGCAGCACATTGTCGAGTAAATGAGGGTTTGAAGGCTAAATTGCTCAACATCCAAGAGATGAGAAACCCAACTTTTGTCGTTGTCGTGGACACAGGACTACTTGACTTGAGCACAGATATATGGAAGGAACAGCTTAACTTCCTCCACAAGTACTTCGGGAGAGCAAAGTTTGCATGGCTGCTAAATCATGACACCTCCAATACCATAAAGATGGAGCTCCGCAGGACAGGGCATATACTGATGATCAACAAACCCCTTTACAAGGCAAAAATGATTCATATTTTGGATGCTGTTATAAAGGAGAAGAACCTTGAGCTACAAAAGAAAAATACCCCTGCTCCAAGGGTCACAATGAAAGAGGGTGATTCGCACGAGTTTCTTGATATTGATTCTGCTCATTTTGATGCTACTAGCTCTGAGAGTTCTGACTTATCAGAAATGGGTAGTTATAATCCTATTAGAGACAAAGAAAGAGAATGTATTGCAAAATCCCATCCATCATCAAAGAACCAGATAAACAACTGCTTAGTCGGATTAACCGATGAATGTTTGGAAGATAATAATTCAAGGAACGAAGAGTCATGTCAGAGCAGCCCCAACTCCCATGATGGCATTGAAGATGCAGAACCAAGAGTGCAGTCCACTTACCAAGCATCCTTTCCAACAGAAGCTCAAGGCAAAGATCCTGAATGTAAAGTTAGAAGCTCATGTAAAGCAGAGAATGGGAAGAAATCTCTTGAAGGCCTGAGGATATTGCTTGCAGAAGATACTCCAGTACTTCAAAGGGTCGCAACTATAATGCTTGAAAAAATGGGAGCTACAGTGGTTGCCGTCGGTGATGGACAACAGGCAGTGAATGCTCTGAATTGCGTAGTCAGTACCGAAGATGGTAGAAGGGAGTCTGTTCAGAAGGAAAGAAACACAAGATGTCAAACAGAAATTCTCAGTTGCCCTCCATATGACTTGATTCTGATGGATTGTCAGATGCCAAGGATGGATGGTTACGAGGCAACAAAGGCAATCAGGAGATCAGAAGTGGGAACGGGCATGCACATTCCCATTGTTGCTCTTACGGCGCATGCAATGTCATCTGATGAAGCCAAATGCTTGGAGGTGGGCATGGATGCTTATTTAACAAAACCAATTGACTTCAAGCTGATGGTGTCCACCATTCTTTCACTCACTAAAACAACATCTTCCTGA 3735 0.4233 MAAEHKDKTSSESSVCSPGSSSGMITKFRLVFDRLWGFATSWKKRSTPHGRRIFHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMVMLAILIGLLTLLTWHFTKIYTKKSLESLAYGLRYELLQRPILRMWNILNSTAEITTAQVKLSEYVIRRYSNPATQAEQVELYEAMKAVTWALFASSKALNSITINYRNGFVQAFHRDLKGNNTFYIYSDLANYSIGAGSSNEINLLSTHQAWNDNAIHGNHSAIWYREPLNPVSGDKIGKAKQIAPEDLINIAGISQVPDGAASWHVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVEFHSGHMYLTSQEGYLLATSTNEPLLMNSTKPPKLKMPVDCEDDVIRLGAEWLQRTYGNNFPPSHEVHIENAWLGHQQYYIDSFFLKLKRLPLVGVIIIPRKYIMGKVDERAFKTLVILISASLCIFVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNFKSQFLANMSHELRTPMAAVIGLLDILMSDDCLTNEQYATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDEEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKVVRGDSARVVQIFANLISNSIKFTPSGHIILRGWCENPNSCADSANFPLDQKKSRTAQKIKAKHHENHLKKTSKKDNKMILWFEVDDTGTGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKEGPGTLMRLYLLLSAPMDASEQHCRLDYANNGLVVLLALPDNMGRLITSKWLHKNGVCTAEASEWNGLTQILRELFHARSSVHNNGFDAAHCRVNEGLKAKLLNIQEMRNPTFVVVVDTGLLDLSTDIWKEQLNFLHKYFGRAKFAWLLNHDTSNTIKMELRRTGHILMINKPLYKAKMIHILDAVIKEKNLELQKKNTPAPRVTMKEGDSHEFLDIDSAHFDATSSESSDLSEMGSYNPIRDKERECIAKSHPSSKNQINNCLVGLTDECLEDNNSRNEESCQSSPNSHDGIEDAEPRVQSTYQASFPTEAQGKDPECKVRSSCKAENGKKSLEGLRILLAEDTPVLQRVATIMLEKMGATVVAVGDGQQAVNALNCVVSTEDGRRESVQKERNTRCQTEILSCPPYDLILMDCQMPRMDGYEATKAIRRSEVGTGMHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDFKLMVSTILSLTKTTSS 1244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0655 1244 PRINTS Bacterial sensor protein C-terminal signature 731 749 IPR004358 GO:0016310|GO:0016772
Glsi09g0655 1244 PRINTS Bacterial sensor protein C-terminal signature 696 710 IPR004358 GO:0016310|GO:0016772
Glsi09g0655 1244 PRINTS Bacterial sensor protein C-terminal signature 714 724 IPR004358 GO:0016310|GO:0016772
Glsi09g0655 1244 FunFam Histidine kinase 1-like protein 494 573 - -
Glsi09g0655 1244 SMART REC_2 1093 1235 IPR001789 GO:0000160
Glsi09g0655 1244 Pfam Response regulator receiver domain 1095 1234 IPR001789 GO:0000160
Glsi09g0655 1244 ProSiteProfiles Histidine kinase domain profile. 513 771 IPR005467 -
Glsi09g0655 1244 PANTHER TWO-COMPONENT HISTIDINE KINASE 63 776 - -
Glsi09g0655 1244 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 561 767 IPR036890 -
Glsi09g0655 1244 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 619 769 IPR003594 -
Glsi09g0655 1244 CDD REC_hyHK_CKI1_RcsC-like 1095 1235 - -
Glsi09g0655 1244 CDD HisKA 507 568 IPR003661 GO:0000155|GO:0007165
Glsi09g0655 1244 ProSiteProfiles Response regulatory domain profile. 1094 1239 IPR001789 GO:0000160
Glsi09g0655 1244 Pfam His Kinase A (phospho-acceptor) domain 507 572 IPR003661 GO:0000155|GO:0007165
Glsi09g0655 1244 MobiDBLite consensus disorder prediction 1 21 - -
Glsi09g0655 1244 Gene3D - 574 772 IPR036890 -
Glsi09g0655 1244 MobiDBLite consensus disorder prediction 1031 1056 - -
Glsi09g0655 1244 SMART HKATPase_4 619 771 IPR003594 -
Glsi09g0655 1244 SMART HisKA_10 506 572 IPR003661 GO:0000155|GO:0007165
Glsi09g0655 1244 SUPERFAMILY CheY-like 1091 1239 IPR011006 -
Glsi09g0655 1244 Gene3D - 1073 1241 - -
Glsi09g0655 1244 Gene3D - 494 573 - -
Glsi09g0655 1244 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 493 573 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0655 Glsi-ChrGlsi09 4532425 4539260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0655 17 1243 Histidine Kinase Gene Family AT2G17820 65.052 0.0 1590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi09g0655 HATPase_c 3.1e-22 CL0025