Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0646 ATGCAAAAGCCTTACGAATTACAAGAAATAATGGCTTTGAGGTATTATGCTATGCAATATAGACGAAGCAGACTTGAACTTACCATATTACTAATTTTCTCTTTTATTTTTAACCATAACCACTCAATAGCTATTAATAAGGGTTCAATTCGAATGAGCGAGGGGAGATTCTCCGGTGTCGTTCAGTGGTTCAACGATGCTAAAGGCTTTGGCTTTATCAAGCCTGAGGATGGAGGAGAAGATCTATTTATTCATCAATCTTCGATCAGATCCGATGGCTATCGTAGCCTCGTAGAAGGAGATCACGTCGAATTCTCGATCGCCAATGGCGACAAGGAGAAAACCAAGGCCATTGATGTCACTGGCCCAAATGGAACTCCTCTACAGTCTAAGAAAGATAATTACGGTGGCCGTGGCGGGGGCGGGTATCGTTTTAGCGGTGGACGGAGAGGCGGAGATAGGCGCAACGGTGGAGGAGTCTGCTACCAATGTGGTGATCTTGGGCATTTAGCCAGGGATTGCGTCCGGTGCAACAATGCCGGCGGCGGTGCTTGTTTTAATTGTGGTGAAGTTGGGCACTTGGCAAGGGATTGCACGCGCGGAAACAAAGGCGGCGGCGGCGGCGGCAGTGGGTCTTGCTTTAGTTGTGGTGAGTATGGGCACATGGCGAGGGACTGCAGCAAGGGAAGCAGCGTTGGCAGTGGTGGAGGTTGCTTTAGATGTGGGGAAGTCGGCCACTTGGCCAGGGATTGCAGCAAAGAAAGCGGAAGCCTTGATTTGGCCATTGCTATAGTGGATCTCACCTGCCGTTTGCAAGTTGCATATGATCTCCGTTGTAGCCAATGGAGAATTTCGGCTCTTGAGGCTGGTTGA 873 0.4937 MQKPYELQEIMALRYYAMQYRRSRLELTILLIFSFIFNHNHSIAINKGSIRMSEGRFSGVVQWFNDAKGFGFIKPEDGGEDLFIHQSSIRSDGYRSLVEGDHVEFSIANGDKEKTKAIDVTGPNGTPLQSKKDNYGGRGGGGYRFSGGRRGGDRRNGGGVCYQCGDLGHLARDCVRCNNAGGGACFNCGEVGHLARDCTRGNKGGGGGGSGSCFSCGEYGHMARDCSKGSSVGSGGGCFRCGEVGHLARDCSKESGSLDLAIAIVDLTCRLQVAYDLRCSQWRISALEAG 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0646 290 SUPERFAMILY Nucleic acid-binding proteins 55 122 IPR012340 -
Glsi09g0646 290 ProSiteProfiles Zinc finger CCHC-type profile. 213 228 IPR001878 GO:0003676|GO:0008270
Glsi09g0646 290 PANTHER COLD SHOCK DOMAIN PROTEIN 2 180 228 - -
Glsi09g0646 290 ProSitePatterns Cold-shock (CSD) domain signature. 70 89 IPR019844 -
Glsi09g0646 290 SUPERFAMILY Retrovirus zinc finger-like domains 204 254 IPR036875 GO:0003676|GO:0008270
Glsi09g0646 290 PRINTS Cold shock protein signature 95 113 IPR002059 GO:0003676
Glsi09g0646 290 PRINTS Cold shock protein signature 59 74 IPR002059 GO:0003676
Glsi09g0646 290 PRINTS Cold shock protein signature 80 89 IPR002059 GO:0003676
Glsi09g0646 290 SMART c2hcfinal6 212 228 IPR001878 GO:0003676|GO:0008270
Glsi09g0646 290 SMART c2hcfinal6 184 200 IPR001878 GO:0003676|GO:0008270
Glsi09g0646 290 SMART c2hcfinal6 160 176 IPR001878 GO:0003676|GO:0008270
Glsi09g0646 290 SMART c2hcfinal6 237 253 IPR001878 GO:0003676|GO:0008270
Glsi09g0646 290 Pfam 'Cold-shock' DNA-binding domain 58 122 IPR002059 GO:0003676
Glsi09g0646 290 Gene3D - 51 134 IPR012340 -
Glsi09g0646 290 ProSiteProfiles Cold-shock (CSD) domain profile. 56 122 IPR002059 GO:0003676
Glsi09g0646 290 SUPERFAMILY Retrovirus zinc finger-like domains 152 201 IPR036875 GO:0003676|GO:0008270
Glsi09g0646 290 Gene3D - 204 232 - -
Glsi09g0646 290 Gene3D - 233 257 - -
Glsi09g0646 290 SMART csp_8 58 123 IPR011129 GO:0003676
Glsi09g0646 290 Gene3D - 142 203 - -
Glsi09g0646 290 ProSiteProfiles Zinc finger CCHC-type profile. 238 253 IPR001878 GO:0003676|GO:0008270
Glsi09g0646 290 ProSiteProfiles Zinc finger CCHC-type profile. 161 174 IPR001878 GO:0003676|GO:0008270
Glsi09g0646 290 ProSiteProfiles Zinc finger CCHC-type profile. 185 200 IPR001878 GO:0003676|GO:0008270
Glsi09g0646 290 Pfam Zinc knuckle 212 228 IPR001878 GO:0003676|GO:0008270
Glsi09g0646 290 Pfam Zinc knuckle 160 174 IPR001878 GO:0003676|GO:0008270
Glsi09g0646 290 Pfam Zinc knuckle 237 253 IPR001878 GO:0003676|GO:0008270
Glsi09g0646 290 Pfam Zinc knuckle 184 199 IPR001878 GO:0003676|GO:0008270
Glsi09g0646 290 CDD CSP_CDS 59 122 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0646 Glsi-ChrGlsi09 4474029 4477662 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Glsi09g0646 CSD 7.2e-25 CL0021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g0646 09 4474029 4477662 Glsi09g0646 09 4474029 4477662 ECH