Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0643 ATGCTTTCCCTCTCTTTTCCTCCTTCTCTCGCAGCCTCCGTCAATACCGTCTCTTTGCCGCCGCGTCGTGTAAGATCCCGGCCGGTAGTTGCTTTCGCCACCGCCACTGCCACTGCCACCGACACCGAAGCTCGTTCTACTTGGACGGATCGGCAACCGAGGCCATCGTACCTGAGCCCCAATGGCACGAATTCGTGCACATCGCTCTACGGGGTTCTAGGTATCCCCGCCGGTGCCTCGAATCAAGAGATCAAGGCAGCGTACCGGCGACTGGCGAGACTTTGCCATCCGGATGTGGCAGCGATGGACCATAAGAACTCGTCGGCGCACGAGTTCATGACGATTCACGCTGCCTACTCCACTCTATCGGATCCCGAAAAGCGTGCCAATTACGATAGGAGCCTTTTCCCGCGTCAAAGGCCCTTGTCGACGGCGTCGGTATTTCCCGGCTACTCCAGTCGGAACTGGGAAACGGACCAGTGCTGGTAG 489 0.5849 MLSLSFPPSLAASVNTVSLPPRRVRSRPVVAFATATATATDTEARSTWTDRQPRPSYLSPNGTNSCTSLYGVLGIPAGASNQEIKAAYRRLARLCHPDVAAMDHKNSSAHEFMTIHAAYSTLSDPEKRANYDRSLFPRQRPLSTASVFPGYSSRNWETDQCW 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0643 162 ProSitePatterns Nt-dnaJ domain signature. 112 131 IPR018253 -
Glsi09g0643 162 SMART dnaj_3 67 127 IPR001623 -
Glsi09g0643 162 SUPERFAMILY Chaperone J-domain 64 135 IPR036869 -
Glsi09g0643 162 CDD DnaJ 70 124 IPR001623 -
Glsi09g0643 162 MobiDBLite consensus disorder prediction 41 60 - -
Glsi09g0643 162 Gene3D DnaJ domain 58 148 IPR036869 -
Glsi09g0643 162 ProSiteProfiles dnaJ domain profile. 68 135 IPR001623 -
Glsi09g0643 162 PRINTS DnaJ domain signature 107 127 IPR001623 -
Glsi09g0643 162 PRINTS DnaJ domain signature 88 103 IPR001623 -
Glsi09g0643 162 PRINTS DnaJ domain signature 70 88 IPR001623 -
Glsi09g0643 162 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 26 143 - -
Glsi09g0643 162 Pfam DnaJ domain 69 132 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0643 Glsi-ChrGlsi09 4450256 4450744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0643 70 132 C2H2 Transcription Factor Family AT1G74250 43.284 4.57e-08 49.7