Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0641 ATGGGTGTGGCTGTCCTTATCTGGGAACTTTCTTGCAGTGCTTACGAAAAGTTTGGCAGGAGATTGAGACGGGGGAATTCAGAAAAGAGAGCTGAATCTAAGACACAGAACAAAGTTGAACTTTTTATAGAAATGGATCACCGGCAGCATGAATATTTGTCTAAATCTGTTCCTGTTGTGGCAGATTTAGCACCTCCTATTTTGCTTCAGCCTCCCTTGCAGAAATCGCATTCAGAACCCGGGCAGAGAGCTGAAATGAAAGCACAGGATCCAATTACTGTAAGAAAAGTTCAGAAGGCAGACCGCGAGAAACTGAGGAGGGATCGACTAAATGAGCAATTCGTAGAGTTGGGAAACACATTAGACCCTGATAGGCCAAAGAATGACAAGGCAACCATCCTTACAGACACGATCCAAATGCTGAGGGATTTAACTGCTGAAGTCAATAGACTAAAAGCTGAGCATGCAGCACTTTCTGAAGAATCGCGTGAACTAATGCAAGAGAAGAATGAACTCAGAGAAGAGAAGGCTTCTTTAAAATCTGATATTGAAAATCTTAATGCCGAGTGTCATCAGAGAGTCAGGTTCATGTTCCCGTGGACTTCAATTGACCAATCTGTTGTCATGGGGCCACCTTATTCATATCCAGTTTCTACACCCATCCGTCCCAGTCCAATTTCCATTCACCTGCCCCTTCAACCGCTTCCCTTATTTGGAAATCAATATCCTGGTCCAATTCCTAATCCTTGTTCAACGTATGTCCCATTCTCAGCTCGTGCTAGTGCCCCTGTTGAGCAGGCTTCTGCCCAGTATGTGTCCATGTCCCGCATTTCAAGCAAACAAGAATCCCGAAGCAAGCCACCAGATCATGAAAGGCCCAGCAATGGTGAAAGATGTGGTGAGTCTAGTGATGATGTGGCTACAAAGCTTGAACTTAAGATGCCTGGATCGTCAGCACAACAGGATTCCTCTTGTGGAGGAAGGAAGGAAAGAAATATTACAGATGGGAGTGCTTTAAGCAGGTATTCTTCATCTAAAGTACTTCAAGATAGCTCCAACAGTATAGGTGAGATCTCGAAGGCAGGTCTACACAAACTCCAGCAAACACCTCTTGACGTAATCCTATACACATCTTGTGTGGGATGCCAAAATCAACAACTGGAGTTTGAAAGTTGCATAGAACGGTCAGAAAAGAACAGGGCTAGAGCTCAGTCTGCAAAGGAGATTATCTTTAAGAAAAAAACTCTGCCACCCTCACATCTCAGCCTCTGA 1272 0.4434 MGVAVLIWELSCSAYEKFGRRLRRGNSEKRAESKTQNKVELFIEMDHRQHEYLSKSVPVVADLAPPILLQPPLQKSHSEPGQRAEMKAQDPITVRKVQKADREKLRRDRLNEQFVELGNTLDPDRPKNDKATILTDTIQMLRDLTAEVNRLKAEHAALSEESRELMQEKNELREEKASLKSDIENLNAECHQRVRFMFPWTSIDQSVVMGPPYSYPVSTPIRPSPISIHLPLQPLPLFGNQYPGPIPNPCSTYVPFSARASAPVEQASAQYVSMSRISSKQESRSKPPDHERPSNGERCGESSDDVATKLELKMPGSSAQQDSSCGGRKERNITDGSALSRYSSSKVLQDSSNSIGEISKAGLHKLQQTPLDVILYTSCVGCQNQQLEFESCIERSEKNRARAQSAKEIIFKKKTLPPSHLSL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0641 423 SMART finulus 100 150 IPR011598 GO:0046983
Glsi09g0641 423 Coils Coil 134 189 - -
Glsi09g0641 423 CDD bHLH_AtILR3_like 99 173 - -
Glsi09g0641 423 MobiDBLite consensus disorder prediction 80 103 - -
Glsi09g0641 423 MobiDBLite consensus disorder prediction 282 308 - -
Glsi09g0641 423 MobiDBLite consensus disorder prediction 70 103 - -
Glsi09g0641 423 MobiDBLite consensus disorder prediction 271 346 - -
Glsi09g0641 423 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 164 IPR036638 GO:0046983
Glsi09g0641 423 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 94 144 IPR011598 GO:0046983
Glsi09g0641 423 PANTHER TRANSCRIPTION FACTOR BHLH121 70 358 IPR044579 GO:0003700|GO:0006879
Glsi09g0641 423 Pfam Helix-loop-helix DNA-binding domain 95 144 IPR011598 GO:0046983
Glsi09g0641 423 Gene3D - 93 193 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0641 Glsi-ChrGlsi09 4434802 4439261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0641 84 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 52.653 1.02e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi09g0641 HLH 1.1e-08 No_clan