Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0640 ATGGGTGTCTGCTTTTCTACCACAAAAATCAGTGGCTCAAACAGCAATAACACAAACGCCGGCGCCACCATTTCCACCGTCGTTAATCACAATCGTAAAGAGGGTAAAAAACCTCAATCGAGGACAACCACGGTAACTGCACCTAAGCAACAAACGTCCGGCGATCAGCGACAAAAAGTATCGAATGAGAACCAGAAGAATAAGGAAAATAAGAATTTCCAGAAGCAAAGGCCAAATGACCACCCCAACCCAAATTCCAGACGCAAACATATCCCATGCGGAAAGCGCACCGATTTCGGCTACGACAAAGATTTTGAGGAGCGATACTCCCTTGGAAAATTGTTAGGACACGGACAATTTGGTTATACATATGTTGGAACAGATAAAGCAAATGGGGATCGGGTGGCCGTGAAGAGACTTGAAAAGGGCAAGATGGTTCACCCTATAGCTGTTGAGGACGTTGAGCGAGAGGTCAAGATATTGAAAGAACTTGCAGGCCATGAGAATGTTGTCCATTTTTATAATGCTTTTGAGGATGATTCATATGTATACATAGTCATGGAGTTATGCGAGGGTGGAGAACTGTTAGATCGAATATTGGCCAAGAAGGACAGCCGTTATACTGAAAAAGATGCGGCAGTGGTTGTAAGGCAAATGCTCAAAGTTGCAGCTGAGTGTCATTTACATGGCTTGGTACACCGAGACATGAAACCAGAAAATTTTCTTTTCAAATCTACCAGAGAAGATTCTCCTTTAAAGGCTACAGATTTTGGTTTGTCAGATGTCATAAAACCTGGAAAGAAATTTAAAGATATTGTGGGCAGTGCTTACTACGTTGCCCCTGAAGTTTTAAAACGTAAGTCAGGACCTGAATCAGATGTATGGAGTATTGGAGTAATTACATATATATTGCTTTGTGGGAGGCGCCCATTTTGGGATAAGACTGAGGATGGTATCTTTAAGGAGGTCTTACGGAATAAGCCTGATTTCCGCCGAAAACCATGGCATACCATAAGTGATGCTGCAAAGGATTTTGTGAAGAAATTGCTGGTAAAGGATCCTCGGGCAAGATTAACTGCTGCTCAGGCTCTATCGCATCCATGGGTTAGAGAAGGAGGAGAGGCATTAGAGATTCCTATTGATATATCTGTTCTGAAAAACATGCGGCAATTTGTGAAATATAGTAGACTGAAACAATTTGCACTGAGGGCATTGGCTAGCACGCTTAATGAAGAAGAGTTAGCTGATCTCAAAGATCAATTTGACACTATAGATGTGGACAAAAATGGTTCTATTAGTCTGGAAGAGATGAGACAGGCTCTTGCTAAAGATCTCCCTTGGAGGTTGAAAGAATCGCGTGTACTAGAGATATTGCAAGCGATGGACAGCAACACAGATGGGCTTGTGGATTTCTCTGAGTTTGTGGCAGCTACATTTCAAGTACGTCAATTGGAGCATGATTCCGAGAAGTGGCAGCAACGGTCACAAGCAGCCTTTGAGAAATTTGACTTAGACAAGGATGGCTATATTACTCCAGAAGAACTTAGAATGCATACGGGCTTAAAAGGCTCCATTTATCCGCTGCTTGAGGAAGCCGATATTGACAAAGATGGAAAAATCAGCCTTTCAGAATTTCGAAGACTTTTAAGAACTGCAAGCATTGGTTCAGGAAATTTGCCAAGCCCAACTGCCTATTAG 1698 0.4246 MGVCFSTTKISGSNSNNTNAGATISTVVNHNRKEGKKPQSRTTTVTAPKQQTSGDQRQKVSNENQKNKENKNFQKQRPNDHPNPNSRRKHIPCGKRTDFGYDKDFEERYSLGKLLGHGQFGYTYVGTDKANGDRVAVKRLEKGKMVHPIAVEDVEREVKILKELAGHENVVHFYNAFEDDSYVYIVMELCEGGELLDRILAKKDSRYTEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTREDSPLKATDFGLSDVIKPGKKFKDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWHTISDAAKDFVKKLLVKDPRARLTAAQALSHPWVREGGEALEIPIDISVLKNMRQFVKYSRLKQFALRALASTLNEEELADLKDQFDTIDVDKNGSISLEEMRQALAKDLPWRLKESRVLEILQAMDSNTDGLVDFSEFVAATFQVRQLEHDSEKWQQRSQAAFEKFDLDKDGYITPEELRMHTGLKGSIYPLLEEADIDKDGKISLSEFRRLLRTASIGSGNLPSPTAY 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0640 565 Gene3D Phosphorylase Kinase; domain 1 102 194 - -
Glsi09g0640 565 PANTHER SERINE/THREONINE-PROTEIN KINASE 87 542 - -
Glsi09g0640 565 FunFam calcium-dependent protein kinase 28-like 195 388 - -
Glsi09g0640 565 ProSiteProfiles EF-hand calcium-binding domain profile. 449 484 IPR002048 GO:0005509
Glsi09g0640 565 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Glsi09g0640 565 ProSiteProfiles Protein kinase domain profile. 109 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0640 565 ProSiteProfiles EF-hand calcium-binding domain profile. 412 447 IPR002048 GO:0005509
Glsi09g0640 565 SUPERFAMILY EF-hand 398 550 IPR011992 -
Glsi09g0640 565 ProSitePatterns EF-hand calcium-binding domain. 503 515 IPR018247 -
Glsi09g0640 565 Pfam Protein kinase domain 109 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0640 565 FunFam CDPK-related kinase 1 102 194 - -
Glsi09g0640 565 CDD STKc_CAMK 108 368 - -
Glsi09g0640 565 CDD EFh 496 550 IPR002048 GO:0005509
Glsi09g0640 565 Pfam EF-hand domain pair 496 549 IPR002048 GO:0005509
Glsi09g0640 565 Pfam EF-hand domain pair 416 477 IPR002048 GO:0005509
Glsi09g0640 565 ProSitePatterns EF-hand calcium-binding domain. 533 545 IPR018247 -
Glsi09g0640 565 ProSiteProfiles EF-hand calcium-binding domain profile. 528 555 IPR002048 GO:0005509
Glsi09g0640 565 Gene3D Transferase(Phosphotransferase) domain 1 195 390 - -
Glsi09g0640 565 CDD EFh 416 477 IPR002048 GO:0005509
Glsi09g0640 565 MobiDBLite consensus disorder prediction 61 97 - -
Glsi09g0640 565 MobiDBLite consensus disorder prediction 1 29 - -
Glsi09g0640 565 MobiDBLite consensus disorder prediction 40 60 - -
Glsi09g0640 565 MobiDBLite consensus disorder prediction 1 97 - -
Glsi09g0640 565 FunFam Calcium-dependent protein kinase 28 410 479 - -
Glsi09g0640 565 ProSiteProfiles EF-hand calcium-binding domain profile. 490 525 IPR002048 GO:0005509
Glsi09g0640 565 ProSitePatterns EF-hand calcium-binding domain. 425 437 IPR018247 -
Glsi09g0640 565 Gene3D - 410 479 - -
Glsi09g0640 565 ProSitePatterns EF-hand calcium-binding domain. 462 474 IPR018247 -
Glsi09g0640 565 SMART efh_1 416 444 IPR002048 GO:0005509
Glsi09g0640 565 SMART efh_1 524 552 IPR002048 GO:0005509
Glsi09g0640 565 SMART efh_1 453 481 IPR002048 GO:0005509
Glsi09g0640 565 SMART efh_1 494 522 IPR002048 GO:0005509
Glsi09g0640 565 SMART serkin_6 109 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0640 565 Gene3D - 391 548 - -
Glsi09g0640 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Glsi09g0640 565 SUPERFAMILY Protein kinase-like (PK-like) 107 382 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0640 Glsi-ChrGlsi09 4430214 4434769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0640 1 565 EF-hand Containing Proteins AT2G17890 73.448 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi09g0640 Pkinase 5.3e-69 CL0016