Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0627 ATGAAGCGAGCAAGGAAATCGAACAGGGTTTCATGGGCTACTGGATTTAATCTCTGTCAGGTACAATTGTTCTTATCTGAGGATTGCCCTTCAAAAGTTGGCCAGAAATCTCAAGATCATCTTCAGGCAAAAACATCATCCATGTTGCATTCAAATATTACTGAATATAATGATTTACCCCCTGGGTTTGAATACAATCAGTTTCTGAACCAATCGAAGGATGAACTCTCCCACATTTGTCGGATTAATTGGAAATGCCCTCCTTTGTTTGTCTTCAGTTATAACTGGCTCGTTGCAGCTGGTGAAGAAAGTAGGGAGAAAGAAGATCAAAAGCTCAGGGAATTGAGAGTGCTTGAAGCAGTTTATCCTCGGCTATCGGCCATTCCTCCAAGCCCTTCCGTTTCTTTGGATGTAGAAGAGGAAGATTATGATGATAACCTGACGCCTCTCATCCCTATCATTCCCATTGAGGAAGAAGAGTCCATGGATATTAAAACTGAATTCACAGCAGCAGTGGACGCTCTTGCCACTGTTCAGTCACATAACTTGCACCAATATATATCCGCAACTGCAACACCTGTAGGTTTGCAATGTAATGGCACTTCTTCTCTTGCCTCACCTGCCTGTGGAAAGCCCTTACCTGGTATATCTCCCAATGTGGAAGTAGATTTAGCTGCTGCATCTGCTGTTGTAGCTGCCATCATGAAGAGTAATGAACAAGGAAGCTTGATTGATATGGATCTACTCGTTAGAATATTTAGTGACCCAATAATGATTGAGAAATTAATTAATTATCATAGAACTGCTGCCGCAACTGTATGTGCATCCTCAAATACAGTGGGTTTATTCACGTCTGGGTTGAAGCCTGAAACTCCATCTGTTCCATTGTCAGCACCTATGCCTGATGAGCCAGCCCATGGAGTTCCACCCGCAAGTACAGTATTATCTGCTTCTGTGTTGAAGCCGGCAACCCCATCAGTCTCATTGTTGACACCTACATCTGAGAAGCCAGCAACAACATCCATTCCCTCGTCAAGGCTTATGCCTGGTAAACCCACAACTCCCTCAATTCCATTGCCTACACCTACACCTGATATGCACAGGCCTTTGAACAAACACCATATGCCAAATAGAGTGCTACCAACTTTAGATACCCAGCCTCCTCAACAAGATACTATTCTGGCATCTGGGGCGAAGCGAGCGGCATCAATGGCTTCCATTTCATCCAGCGAATTAAGCACGGTGCCAATGACTTCTGCAGGTGGGAACTTGCATCCGGTAACAAATCAGGTGCGGTCTACTGCTAGTACCCTGCCCTACCAAGCAAGTACAGGTTCAGCGTTTGCTGTGAAGGAAGCTCATCCTGTTAAGGATGCAAACTACTATAAGAACCTGATTAGGCAACATGGTGCGGATATGCAAGACATTCAGGACTCACAAATAGGTATCCGCCATAGTAACTTCCAAGATTTGAAATCGGTACATAACAATAAACCAGGAGAAGTGAAATTCAAAATACAGAAAACTTGCATATACTTTAAGAGCTCAAGGGGGTGTAGAAATGGTTCCAGTTGCCCCTATCAGCATGATGTGTCAGTCCAGTGGGGCGGTGGTAATGTTCTAGGGGCCCAGAGTGCAAAAAGATTGAAACTAGGACCTGAAATTAAGGGTAGAATATAA 1680 0.4405 MKRARKSNRVSWATGFNLCQVQLFLSEDCPSKVGQKSQDHLQAKTSSMLHSNITEYNDLPPGFEYNQFLNQSKDELSHICRINWKCPPLFVFSYNWLVAAGEESREKEDQKLRELRVLEAVYPRLSAIPPSPSVSLDVEEEDYDDNLTPLIPIIPIEEEESMDIKTEFTAAVDALATVQSHNLHQYISATATPVGLQCNGTSSLASPACGKPLPGISPNVEVDLAAASAVVAAIMKSNEQGSLIDMDLLVRIFSDPIMIEKLINYHRTAAATVCASSNTVGLFTSGLKPETPSVPLSAPMPDEPAHGVPPASTVLSASVLKPATPSVSLLTPTSEKPATTSIPSSRLMPGKPTTPSIPLPTPTPDMHRPLNKHHMPNRVLPTLDTQPPQQDTILASGAKRAASMASISSSELSTVPMTSAGGNLHPVTNQVRSTASTLPYQASTGSAFAVKEAHPVKDANYYKNLIRQHGADMQDIQDSQIGIRHSNFQDLKSVHNNKPGEVKFKIQKTCIYFKSSRGCRNGSSCPYQHDVSVQWGGGNVLGAQSAKRLKLGPEIKGRI 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0627 559 ProSiteProfiles Zinc finger C3H1-type profile. 504 532 IPR000571 GO:0046872
Glsi09g0627 559 MobiDBLite consensus disorder prediction 326 351 - -
Glsi09g0627 559 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 2 552 - -
Glsi09g0627 559 MobiDBLite consensus disorder prediction 326 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0627 Glsi-ChrGlsi09 4324049 4328668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0627 81 152 Homeobox Transcription Factor Family AT4G02560 43.056 1.86e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi09g0627 None None None