Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0626 ATGAGGACTCGAAATGCCGGTTCCTCCAAATCAACCCCCGCTAAGAAGACACCGCCGGCAAGGAAATCTGCATCTAAAACTAAAACTCCTGTGACCCCTTCCAATCCGGCCGGAGAGTCCGCTAACCCGAAGTCCCCTGAGACAAAGGGCTTTTCTACCCCGAGAACGAGACAGGCGAAGAAGAACGAAGCCTCGCCCGCACCAAACCCCGCCTCTGATTCGAAACTGGAGCAATCGTCTGAGGAGACAAAAACATTGGCTGATGCTGCTGAAGTGTCAGAAGATACCAAAGTTGCCGCAACTAGAAAATCAGCGGTGAGGAGAACATCAGGGAGAGGTAGAACTTCAACCAAAGCAGTTTCCATTCCGAAATCAGTAGAACAAGTGGAAGCAATAGCTGATAAAACTCCTGAAATGGATAATTTTGAGGCAGCAGAGAAAGTTGATGAGCCTCAAAATGTTGAAGTAGCCAATGTAAATGAGATTGGGAGTGAAAAAGAGGGGGAACAAGACGCGGGATTTGGTGGACAATCTGAAGAGAAGGAACAAAATCCCATGGAAGTGGATGTACCTGTTGTTGAGAATGTTCGTGAATCAGCAGAAGAGGAAATAAACACAGAGGAAGTTCAAGTACCAGCCTCTCCAGATGCCTCCATTTCTTTGAAGCAAGAAGGACCCATTGCTGTGGACCTCACTGAATCACAGGAGAGTGAAGATTTAACTGGTGCAAAAGAGGGAAAAAAAGAAAATGAAGAATTGAAGGGAGTGGAGGGAGAGAAAATTAAGGAAGAATCAAAGGAAGAAGAGAGAAAGAATATTGATCATGGAGAGGAATATAATATTGAGTCTGTTAGTGCAGAAGTGAAAGACCAGTTGCAGCAAGAAGATGTTGAACCTGAAAAAGAGAATATTGGTGGTGTCGAAGGAACACAAGATTGTGGTGAAAAGTTGGATATTGGAGAACAAGGGAAGCCTCCTCAAGAAACCGAGATGTTGGAAGAGGAGCCTCCTCAAGAAACCGAGACATTGGAAGAGAAGCCTCCTGAAGAAACTGAAACATTGGAAGAAGAACCTCCTGAAGAAACTGAGACATTGGAAGAGGAGCATAAGGAATTGGCAGCTATTGCAAATGAGCGCAAGATTAAGAAAGAACATGAAATATTTGTTGGAGGGCTGGATCGTGATGCTACAGAGGAAGATCTAAGAAAGGTTTTTGAGAAGATTGGTGAGGTGGTTGAAGTCAGGTTGCACAAAAATCCTTCAATGAACAGAAATAAGGGCTATGCTTTTGTAAAGTTTGCTAATAAGGAACATGCCAAAAAAGCTTTATCAGAAATGAAGAACCCTGTTGTATATTCCTGTCCTGATTGATATGGGTGGCAGATTAAACAGAAGTTGAATGACTATGGTATTGAAGGTGTTGAAAACATTACCCTTGTTCCGGATGCTCAACATGAAGGGTTGAGCAGGGGATTTGCATTCCTTGAGTTCTCTTGTCATGCTGATGCCATGTTTGCTTATAAGAGGCTTCAAAAGCCTGATGCCATCTTTGGCCATGCTGAGAGAACTGCCAAAGTAGCCTTTGCTGAACCCTTACGGGAGCCAGACCCAGAGATAATGGCACATACAAAAGTGAGAGCTAGGCTTTCAAATCCTTTGCCTAAAACACAGGCTGTCAAGGGTGGCATGTGTGGTGGGTTCCGAATTGGTCATGCTAGGACTGGAGCCTTTCCAAGATTTGGAAGAGGTTCTGCACAGGGAGGACACCCCTTCAACTGGGGAAATTTTAATAGGAATAGGAACTTCTATCCTGGCAGACAGAGTCAAATTGGAAGAATAAGTTCTCGGAATGACTTTGATTTTAGTAATACACCTCCAAATATCCATCCGAGACAATTTGGTCCACAAGGTGAAAGAAGGGGGCCTTTTTGGGGTGGACATTATGCTGGTGGCCAAGGTGCTGGGGTTGCTGGTCCATCTACACCTTATCTTGATAGAGCATGGTATGGTCCTGTGAGAGGCCCTGGTGATGCCATTCCCCCAAGGAGGCCATTCTCCTCAGATGGACAGTTTGAGAGGCCTTTTATGGGAAGGCATTTTGATGATCCGCATCTTTATGATGAAAATGTGCATGGGGTGAAACGGCCATTTTATATGACTGACCCAGATCCTGATTACATGGGGCCTAGTAGACTTCGTCCTCGATTGGACTATACTGATCCAGCTTTATTTCATGGAAATCATTACCATGATTCCTTTGGGGCTGGCAGCAGGCAAAGCTCGCATGACTATTATGGTCCTGATGTGGACCTGGAATCGTGGGATGGACTTCTCAATGATGAGCATGCAGCTAGCTGTTTGCATGAAATTTTGAAGTCCTGGAGTGAGAATTATGTGATCTTGTATAATGGAGTGGGGTGGAACTCCTTTTGCTTAGAAGAGAATATAGGAATGTTGAAGAGGGCTAGACTGGATATCTTGTCTTTAAGCAAAGCGTTTGTAGTCATGGTGCTAATGATGGCAGTTTTGCTGAATACGAGCCATGATATGAAATCCGTGCTGCTAATTGATCAGTGCTGCACTCTTGATCCTCTGGTTCTATGTCATTTTGTGATTCTCTTTGATTTCCAAGTTACCCTGCTTTTGTGGCATCGTTTCAGCAAAGAACGGGGTCAGATATTGATGTTAAAGTATAACCAATCTCTGGTGTTGCTGAGGTGGAATCCTGAAGGGCTATCACCTCATCCTGTGTAA 2754 0.4441 MRTRNAGSSKSTPAKKTPPARKSASKTKTPVTPSNPAGESANPKSPETKGFSTPRTRQAKKNEASPAPNPASDSKLEQSSEETKTLADAAEVSEDTKVAATRKSAVRRTSGRGRTSTKAVSIPKSVEQVEAIADKTPEMDNFEAAEKVDEPQNVEVANVNEIGSEKEGEQDAGFGGQSEEKEQNPMEVDVPVVENVRESAEEEINTEEVQVPASPDASISLKQEGPIAVDLTESQESEDLTGAKEGKKENEELKGVEGEKIKEESKEEERKNIDHGEEYNIESVSAEVKDQLQQEDVEPEKENIGGVEGTQDCGEKLDIGEQGKPPQETEMLEEEPPQETETLEEKPPEETETLEEEPPEETETLEEEHKELAAIANERKIKKEHEIFVGGLDRDATEEDLRKVFEKIGEVVEVRLHKNPSMNRNKGYAFVKFANKEHAKKALSEMKNPVVYSCPDXYGWQIKQKLNDYGIEGVENITLVPDAQHEGLSRGFAFLEFSCHADAMFAYKRLQKPDAIFGHAERTAKVAFAEPLREPDPEIMAHTKVRARLSNPLPKTQAVKGGMCGGFRIGHARTGAFPRFGRGSAQGGHPFNWGNFNRNRNFYPGRQSQIGRISSRNDFDFSNTPPNIHPRQFGPQGERRGPFWGGHYAGGQGAGVAGPSTPYLDRAWYGPVRGPGDAIPPRRPFSSDGQFERPFMGRHFDDPHLYDENVHGVKRPFYMTDPDPDYMGPSRLRPRLDYTDPALFHGNHYHDSFGAGSRQSSHDYYGPDVDLESWDGLLNDEHAASCLHEILKSWSENYVILYNGVGWNSFCLEENIGMLKRARLDILSLSKAFVVMVLMMAVLLNTSHDMKSVLLIDQCCTLDPLVLCHFVILFDFQVTLLLWHRFSKERGQILMLKYNQSLVLLRWNPEGLSPHPV 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0626 917 MobiDBLite consensus disorder prediction 674 693 - -
Glsi09g0626 917 MobiDBLite consensus disorder prediction 1 76 - -
Glsi09g0626 917 SUPERFAMILY RNA-binding domain, RBD 386 511 IPR035979 GO:0003676
Glsi09g0626 917 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 387 450 IPR000504 GO:0003723
Glsi09g0626 917 MobiDBLite consensus disorder prediction 237 305 - -
Glsi09g0626 917 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 543 763 - -
Glsi09g0626 917 MobiDBLite consensus disorder prediction 162 187 - -
Glsi09g0626 917 MobiDBLite consensus disorder prediction 1 122 - -
Glsi09g0626 917 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 385 469 IPR000504 GO:0003723
Glsi09g0626 917 MobiDBLite consensus disorder prediction 314 331 - -
Glsi09g0626 917 MobiDBLite consensus disorder prediction 77 102 - -
Glsi09g0626 917 CDD RRM_SF 387 455 - -
Glsi09g0626 917 Gene3D - 315 455 IPR012677 -
Glsi09g0626 917 SMART rrm1_1 386 459 IPR000504 GO:0003723
Glsi09g0626 917 MobiDBLite consensus disorder prediction 615 630 - -
Glsi09g0626 917 MobiDBLite consensus disorder prediction 615 647 - -
Glsi09g0626 917 Gene3D - 458 530 IPR012677 -
Glsi09g0626 917 MobiDBLite consensus disorder prediction 332 364 - -
Glsi09g0626 917 MobiDBLite consensus disorder prediction 148 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0626 Glsi-ChrGlsi09 4314429 4321500 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0626 387 455 Eukaryotic Initiation Factors Gene Family AT4G34110 33.333 1.05e-06 50.4