Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0625 ATGTCTTCCACCGGAGAAGGTAATGCCCCCACCGCTGACCCGCCCATAGAGAAGCCTAAGCCAGTGAAGGAGAAGAAGCCCAAGGGTCCCAAAGAGACGAAGCCCAAGCAGGCCAAAACGGCTTCTCATCCTCCCTATTTTCAGATGATTAAGGACGCCTTATTGGCTCTGAACGAGAAGGGTGGTTCCAGCCCATACGCCATAGCGAAGTATATGGAGGAGAATCACAAGACAGTGCTGCCTGCGAATTTCAGGAAGATTTTGGCTCTGCAGTTGAAGAACCAAGCTGCAAGAGGAAAGCTCGTCAAGATTAAGGCTTCGTACAAGCTTTCTGAAGCTGCAAAGAAGGATAAGGACAGGACTACCAAGATAACAAGGTCCACCAAAGAGAAGAATCAGCAACGCCCAAAACAAAGCAAAGCCGCTACCACCACTGCAGGTGCTGCCCCAAAGGCAAAGTCGTCCAAGAAAACTGAAACGGCTAAGAAGAAAGATGGAATGAAAAAGACAAAGAAAGTAAGCCCAGCGAAGCCAAAGCAGCCAAAGTCAATTAGGTCTCCGGCCAAGAGGGCTAGGAAAGCTACTGCGTGA 591 0.4958 MSSTGEGNAPTADPPIEKPKPVKEKKPKGPKETKPKQAKTASHPPYFQMIKDALLALNEKGGSSPYAIAKYMEENHKTVLPANFRKILALQLKNQAARGKLVKIKASYKLSEAAKKDKDRTTKITRSTKEKNQQRPKQSKAATTTAGAAPKAKSSKKTETAKKKDGMKKTKKVSPAKPKQPKSIRSPAKRARKATA 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0625 196 CDD H15 40 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi09g0625 196 SMART h15plus2 40 107 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi09g0625 196 PANTHER HISTONE H1 16 189 - -
Glsi09g0625 196 MobiDBLite consensus disorder prediction 167 196 - -
Glsi09g0625 196 MobiDBLite consensus disorder prediction 17 38 - -
Glsi09g0625 196 MobiDBLite consensus disorder prediction 137 151 - -
Glsi09g0625 196 SUPERFAMILY "Winged helix" DNA-binding domain 39 121 IPR036390 -
Glsi09g0625 196 Gene3D - 38 123 IPR036388 -
Glsi09g0625 196 Pfam linker histone H1 and H5 family 43 109 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi09g0625 196 MobiDBLite consensus disorder prediction 1 46 - -
Glsi09g0625 196 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 42 112 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi09g0625 196 FunFam Histone H1 38 132 - -
Glsi09g0625 196 PRINTS Histone H5 signature 56 73 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi09g0625 196 PRINTS Histone H5 signature 170 187 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi09g0625 196 PRINTS Histone H5 signature 29 50 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi09g0625 196 PRINTS Histone H5 signature 139 153 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi09g0625 196 MobiDBLite consensus disorder prediction 96 196 - -
Glsi09g0625 196 MobiDBLite consensus disorder prediction 109 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0625 Glsi-ChrGlsi09 4312011 4312787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0625 30 110 Single Myb Histone (SMH) Gene Family AT1G72740 38.272 2.85e-08 50.4