Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0613 ATGGAACAACCACATGAACAGCGACAACCTTCGTGTCTTCGGCGGCAGGAAAGGTTGAATTTGGGCGGTTCGGATAAGGATGCGGAGATTATGGTCGTCGATCCATGCCAGAGGGTTACTCAAGTGGAGGAGGATTCGCGGCTTGTTGGAGTTCCGGTCACGCTTGCTCGCGATGTTGACATGACCCAGAGAGAGGATGGTTGTTTGCCCACTATTGGGGTGAAGTTAGAGGTTCAGGTTGCTGGCGGCAGTGTGGGAAAAAGAAAGCGAGGTCGGCCAGCGAAGGGCCTCCCGAAAACGCCGCCACTGAGGAAGAATACGGAGGAAGAAGATGTTTGTTTCATATGCTTTGATGGTGGGAGTCTTGTTCTCTGCGATAGTCGGGGTTGCCCTAAAGCATATCATCCCGCATGCATTAAGCGAGACGAGTCATATTTCCGTTCAAAGGCCAAATGGAATTGTGGTTGGCATATATGTAGTATTTGTCAGAAGGCATCCCATTATATGTGCTATACTTGTACATATTCTTTGTGTAAGGGATGCACAAAAGATGCTGATTTTCTCTGTGTAAGAGGAAGTAAAGGTTTGTGTGGAATATGCATGAAAACTATAATGCTCATTGAGAACAGTGCGCAGGGAAATACGGAAATGTGTGAAGTAGATTTTGATGACAAAAGCAGCTGGGAATATCTCTTCAAGGTATATTGGATGTACTTGAAAGGGAAGCTATCTTTAACAGTAGATGAACTACTTCGAGCTAAAAACCCATGGAAAGGAGCTGCTGCTATGGGTTGTAAGGTTGAAGCTCCCCATAAACTTCATTATCTCAGAGATGAAAAAGGTTCTAGGTCTGAGAATTCCTGTACAGAGGTACATTCAAATAATATAAAAGACAATTCCCCTGAAGAAAATACTGTTAGAGCAGGAATTATTGATGCTGTTGCTGGCCAGATGGAGGCTAATGACAACTACAATAATCAGCAGAAGGTAGTTAATGATATGAGGCATAAAAGATGTAAAAAAGCTGATGTGCAAGTGCCACAGATTAACCGATATGAATATGCTGCAATAAATGCTCACAATATTAACCTGATCTACATGCGTCGCAATCAAATGAAGAATCTAATTGAAGACGCTGAAAAGTTTCATGAGAAGGTTGTTGGTTCAATTGTGCGGAGAAGAATCTCTTTTAGTGATCAAAATCAAGAGATGTATAGGCTTGTCCAAGTTGTAGGTATGTTAACCTTGGCAATTTCCAATTCTCAAGGTACAAGTAAGGTTGCTGAACCTTACAAAATAGACACAAGAACAACAAATATTGTGCTTGAAATTTTAAATTTAAACAAGAAAGAGATCATATCAATAGAAGAGATTTCCAATCAAGAATTCTCTGAGGATGAATGCAGTCGTTTATGCCAGAGTATAAGATATGGACTTTTGAAGAGATTGACTGTGGGAGACATTCTGGACAAAGCATTGACACTTCAAGATGTGAGAGTTAATGATTTGCTGGAAGCTGAAATATTACAGCTTAACCATCTTTGTGCTAGAGCAATTGAAAAGGTGATAGAGTGTGTGGAGAAATTGCAGCTACTAAACTCACCTGAGGAACGACAGCGCAGGCTCCATGAAATTCCGGAGATACACTCTGATCCACATATGGATTCAATGTTTGAGTCTGATGAAGATGCTGGAAAGTCAGACGAAAGGAAGCAAGATGACAATATAGGGTCAAAAGATCCTGGATTTGATCAAAGAGAGAAGGAGCTTAATTCTTCAAGAAGTTGGGGTGATGTCTTGAATGGTGTTGGATGCAGAACACGAGATTTGCCCGTCACCCATGAGCAGATTGGAAATATATATATGATAAAGAACCAGATCAACCCTGATGATACAGCAATTGGTGATAGCAATAACGTAGTAATGAGATCAGAAGAATCTGATGTTGCATTAGATATTTCATCATTGCCTATCTGTTCAGGGAGGGAGCTGCAATTTAATGAAACTGCAACTGATAAATTGTGGCACTATCAGGATCCAACTGGGAAGGTTGAAGGACCTTTTTCTATGTTGCAGCTGTATAAGTGGAATGCAGGTGGACTTTTTCCCCCTGATCTCAGAATATGGAGGATTAATGAGACTCAAGATGACTCTGTTATATTGATGAATGCATTAAGTGGTAAGTGTCATAAAAATGTGTCATTGTCAGAACACAGCCAAATCCTTCCTTCGGGGGGCACGGTTGCTTTGGATGATCGTGATAACAGCCAGAATGGTGGGAGAAATGCAACTAGGAACGAAATTCATGCTGACAGTGGAACTATCAAGCAGAGCTGCGAGCAAAAGCAGGATGATCTTAGTACCTGGTCTAGTGGTAAGGATGAATCTCTGAGAAACAATGGATTTCACTCTAATTCTTCTAGTTGGACCATCCCAGCAGATGCCAATCACAATGAGGGGTTAAATGGAATTTCTGAAAAGAGGGAGGAGTCATCAAAAAGTGAAATTTTCTTTCATGCCCAGCCCCATGGCTGTCCTTCCCCTTCAGCTGCCTTTTCTGAGGAATTGGATGAAAATCATTCTTATAGATTGAGGGAAGATGATGGGACTAAGAGAAACACTGAAAAACATAATGGAAATCATGACTCAAACAGGACGTCTGAGGGTCAGAGTCATAGGGAACAGATTTATAAGAAGCAATCAGACAGTGAGGAGAATTCAGGGCAGTCTTCTAGACATAACTGTAGAGGCCCTCATAATAGCATTTCCAATTGCTTGGTTTCCGTGTCTGCTCATGATTCTGTGACAAAAACATCACAGCACAACCTGGAAATTGATTTATCCAGGTTGATTCCTGTAAGTAGTTCCTCAAACTGCTGGGATTCCACATCTGATTTTGTTTCTGTAACCAAACCGTCACCAAACAACCCAGATATTGATTTCTTGGAGTTGCGCAGTCACACCTCTAAGCCTAATAATGCTGAATCTACTGGTCATTCTTATGAAAACAAACAATCTGCTTCTTCAAATGTTCCTGTTCAAGAAGCTGGCCCTATGAGGAGTACTGCTTCCAGCTTAGTCAATGGTGGGACACCACTTCATGAAGTGACTGTTGAATGGAGGAGATGTTCACGTGCTCCTCCTAATCCTTCTGTTGAGGAATGGGACTCCAATGTTGTCTCTGCATCTTCATTGCAACCAACTGAAACAGTTGGTGATTGTATTGCTACTCCATCTTCAATGAGTCAACTAAGTCCTTCTTCCCCCTCTCATCAAGCCTGTAATACATCTGAGTGGCAGGCAATCATTAGCGAACCCAATGCTGATGAATCAGTTTCAGATCTGTTGGCAGAAGTGGAGGCAATAGAATCTCTTGGTGGCTTGGAATCTCCCACTTCAATCATGACTTGTGGTGAGGATTTGACTGAGCGTTCTAAAACTGATTGTCTCGGTTATGCTGAGGGCGGCCTTAGCCCAATGCCTGATGCAGGTAAAGGTGATGCACTGAGCTCCACGGCTGATTTACAATTGCCATCTCAATCCACAGCTGCGGAGGAACCACTACGGGGAATAGATGTACATAATCATCATAGAATATCTGAACATTCTTCAAGAAGTTTTGACGTGGGTACAAAGAACAGTTGTGTTTCAGTTACTCGATGGGAGTCAGGTTCAGAAATTCCATCCACTGCAGCCTGGGACATGGCTACAGATGGAACTTTGAGACTTGGGTCAGAGAGTACAATTGGTGGTTGCGAGGCATCTCAAGGAAATGCAAATAGGGGTTGGAGAGTAGGTCAGGAAACAATGCAGGAAAATAGGAGCATAAATCCATACTCTTCTTCCACAGGAAATCCAGGCTACTTGGGAAGCCAAACAAGATATGGCAGTGATCGATACTCCGCTTCCAGAGATCGGGGGTTTCATGGTTATGGTCGGGAATCGGGTTTTGGTAGGGGTAGAACAGTGTGTAACAGACAACCTTTATTTGGTGTTGGAAATGGGGGTTCGCACAGGCCTCCGCCAAAAGGGCAGCGAATTTGTAAATTTTATGAAAGGGGGCACTGTAAGAAGGGAGCATCATGTGACTACTTGCACCGTTGA 4104 0.4267 MEQPHEQRQPSCLRRQERLNLGGSDKDAEIMVVDPCQRVTQVEEDSRLVGVPVTLARDVDMTQREDGCLPTIGVKLEVQVAGGSVGKRKRGRPAKGLPKTPPLRKNTEEEDVCFICFDGGSLVLCDSRGCPKAYHPACIKRDESYFRSKAKWNCGWHICSICQKASHYMCYTCTYSLCKGCTKDADFLCVRGSKGLCGICMKTIMLIENSAQGNTEMCEVDFDDKSSWEYLFKVYWMYLKGKLSLTVDELLRAKNPWKGAAAMGCKVEAPHKLHYLRDEKGSRSENSCTEVHSNNIKDNSPEENTVRAGIIDAVAGQMEANDNYNNQQKVVNDMRHKRCKKADVQVPQINRYEYAAINAHNINLIYMRRNQMKNLIEDAEKFHEKVVGSIVRRRISFSDQNQEMYRLVQVVGMLTLAISNSQGTSKVAEPYKIDTRTTNIVLEILNLNKKEIISIEEISNQEFSEDECSRLCQSIRYGLLKRLTVGDILDKALTLQDVRVNDLLEAEILQLNHLCARAIEKVIECVEKLQLLNSPEERQRRLHEIPEIHSDPHMDSMFESDEDAGKSDERKQDDNIGSKDPGFDQREKELNSSRSWGDVLNGVGCRTRDLPVTHEQIGNIYMIKNQINPDDTAIGDSNNVVMRSEESDVALDISSLPICSGRELQFNETATDKLWHYQDPTGKVEGPFSMLQLYKWNAGGLFPPDLRIWRINETQDDSVILMNALSGKCHKNVSLSEHSQILPSGGTVALDDRDNSQNGGRNATRNEIHADSGTIKQSCEQKQDDLSTWSSGKDESLRNNGFHSNSSSWTIPADANHNEGLNGISEKREESSKSEIFFHAQPHGCPSPSAAFSEELDENHSYRLREDDGTKRNTEKHNGNHDSNRTSEGQSHREQIYKKQSDSEENSGQSSRHNCRGPHNSISNCLVSVSAHDSVTKTSQHNLEIDLSRLIPVSSSSNCWDSTSDFVSVTKPSPNNPDIDFLELRSHTSKPNNAESTGHSYENKQSASSNVPVQEAGPMRSTASSLVNGGTPLHEVTVEWRRCSRAPPNPSVEEWDSNVVSASSLQPTETVGDCIATPSSMSQLSPSSPSHQACNTSEWQAIISEPNADESVSDLLAEVEAIESLGGLESPTSIMTCGEDLTERSKTDCLGYAEGGLSPMPDAGKGDALSSTADLQLPSQSTAAEEPLRGIDVHNHHRISEHSSRSFDVGTKNSCVSVTRWESGSEIPSTAAWDMATDGTLRLGSESTIGGCEASQGNANRGWRVGQETMQENRSINPYSSSTGNPGYLGSQTRYGSDRYSASRDRGFHGYGRESGFGRGRTVCNRQPLFGVGNGGSHRPPPKGQRICKFYERGHCKKGASCDYLHR 1367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0613 1367 ProSiteProfiles GYF domain profile. 672 726 IPR003169 GO:0005515
Glsi09g0613 1367 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 296 1367 - -
Glsi09g0613 1367 SMART PHD_3 112 158 IPR001965 -
Glsi09g0613 1367 MobiDBLite consensus disorder prediction 902 919 - -
Glsi09g0613 1367 ProSitePatterns Zinc finger PHD-type signature. 113 173 IPR019786 -
Glsi09g0613 1367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 202 IPR013083 -
Glsi09g0613 1367 MobiDBLite consensus disorder prediction 750 815 - -
Glsi09g0613 1367 SMART rtf1 356 477 IPR004343 GO:0003677
Glsi09g0613 1367 Coils Coil 501 521 - -
Glsi09g0613 1367 Pfam Plus-3 domain 361 475 IPR004343 GO:0003677
Glsi09g0613 1367 SUPERFAMILY Plus3-like 357 497 IPR036128 GO:0003677
Glsi09g0613 1367 CDD PHD5_NSD 112 157 - -
Glsi09g0613 1367 SUPERFAMILY CCCH zinc finger 1342 1366 IPR036855 GO:0046872
Glsi09g0613 1367 Pfam GYF domain 675 715 IPR003169 GO:0005515
Glsi09g0613 1367 ProSiteProfiles Zinc finger C3H1-type profile. 1342 1367 IPR000571 GO:0046872
Glsi09g0613 1367 MobiDBLite consensus disorder prediction 988 1030 - -
Glsi09g0613 1367 MobiDBLite consensus disorder prediction 862 901 - -
Glsi09g0613 1367 Gene3D - 357 497 IPR036128 GO:0003677
Glsi09g0613 1367 MobiDBLite consensus disorder prediction 742 834 - -
Glsi09g0613 1367 FunFam Zinc finger CCCH domain-containing protein 19 102 202 - -
Glsi09g0613 1367 MobiDBLite consensus disorder prediction 862 919 - -
Glsi09g0613 1367 SMART gyf_5 673 728 IPR003169 GO:0005515
Glsi09g0613 1367 Gene3D - 674 729 IPR035445 -
Glsi09g0613 1367 SUPERFAMILY FYVE/PHD zinc finger 108 163 IPR011011 -
Glsi09g0613 1367 ProSiteProfiles Zinc finger PHD-type profile. 110 176 IPR019787 -
Glsi09g0613 1367 ProSiteProfiles Plus3 domain profile. 356 500 IPR004343 GO:0003677
Glsi09g0613 1367 MobiDBLite consensus disorder prediction 545 591 - -
Glsi09g0613 1367 SUPERFAMILY GYF domain 669 725 IPR035445 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0613 Glsi-ChrGlsi09 4247952 4254565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0613 110 198 PHD Transcription Factor Family AT5G36670 32.673 3.09e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi09g0613 Plus-3 3.5e-19 No_clan