Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi09g0610 | ATGGATTCTCTTGTACAAACCTCCCTTGAACCTATGCATATGGCACTCTTGTTCATTATTCCACTGATGCTGTTGTTGGGTTTAGTGGCTCGAATTCGGGCAAGGCCACCTTATCCACCTGGACCAAAAGGCTTGCCCTTAATAGGTAACATGCTCATGATGCACCACCTCACCCACAGGGGTCTAGCCAATCTAGCCAAGCAGTATGGTGGCATCTTTCACCTCCGAATGGGCTTCCTTCACATGGTGGCCATTTCGGACCCAGACGCAGCTCGTCAAGTTCTTCAAGTCCAAGACAACATCTTCTCCAATCGCCCCGCCACCGTAGCCATTAGCTACCTCACCTATGACCGCGCTGACATGGCCTTCGCTCACTACGGTCCCTTCTGGCGTCAGATGCGAAAGCTCTGCGTCATGAAGCTCTTCAGCCGCAAACGAGCCGAGTCATGGCAGTCCGTACGACACGAAGTCGATACCGTTGTCCGTACAGTGGTGGCCAACACCGGGAAGCCTGTGAATATCGGGGAGTTGGTCTTTTCGCTCACCAAAAATATAATTTATCGGGCAGCTTTCGGGTCGAGCTCGCAGGAAGGGCAGGACGAGTTCATTGGGATACTGCAGGAGTTCTCCAAGTTGTTTGGCGCTTTTAATATCGCCGACTTCATCCCCTCTCTCGGGTGGGTCGACCCGCAAGGCCTCAACACTAGACTCGCCAAGGCTCGTGGGGCACTGGACACATTCATAGATAAGATCATTGACGAACATATGGAGAAGAAGAGGGATAATAGCAACGTTGGTGGAGGTGATGAAGACATGGTGGATGAATTGTTGGCTTTTTACAGTGATGAGGCTAAAGCCAGTGAATCAGAGGATAATCAGAACTCCATCAGACTCACCAAGGATAACATCAAAGCCATCATCATGGACGTGATGTTTGGGGGGACGGAGACGGTGGCGTCAGCGATAGAGTGGACCATGGCAGAGCTGATGAGAAGCCCAGAAGATCTGAAGAGGGTCCAACAAGAACTGGCTGACGTGGTGGGTCTTGATCGCAGAGTGGAAGAGACCGACTTCGACAAGCTCACCTACGTTAAATGCGCACTCAAGGAAACACTGCGCCTCCACCCTCCCATCCCCTTGCTCCTCCACGAGACAGCCGAGGATGCGGAGGTTTCCGGCTACTACATTCCCAAGAAGGCACGCGTGATGATCAACGCTTGGGCAATTGGGAGGGACAAGAATTCCTGGGAGGACCCTGAATCGTTTAAGCCATCCAGGTTTCTGAAGGAGGGCGTCCCCGATTTCAAAGGCAGCAACTTCGAGTTCATCCCTTTCGGATCGGGTCGAAGGTCCTGTCCCGGCATGCAACTCGGACTCTACGCCCTGGAATTATCGGTGGCTCACCTTCTTCACTGTTTCACGTGGGAGTTGCCGGACGGGATGAAGCCCAGTGAGATGGACATGAGCGACGTATTCGGACTCACCGCTCCCAGAGCCAGTCGACTTGTTGCCATACCCAGTAAGCGCGTGGTGTGCCCTCTCTTTTAA | 1548 | 0.5297 | MDSLVQTSLEPMHMALLFIIPLMLLLGLVARIRARPPYPPGPKGLPLIGNMLMMHHLTHRGLANLAKQYGGIFHLRMGFLHMVAISDPDAARQVLQVQDNIFSNRPATVAISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWQSVRHEVDTVVRTVVANTGKPVNIGELVFSLTKNIIYRAAFGSSSQEGQDEFIGILQEFSKLFGAFNIADFIPSLGWVDPQGLNTRLAKARGALDTFIDKIIDEHMEKKRDNSNVGGGDEDMVDELLAFYSDEAKASESEDNQNSIRLTKDNIKAIIMDVMFGGTETVASAIEWTMAELMRSPEDLKRVQQELADVVGLDRRVEETDFDKLTYVKCALKETLRLHPPIPLLLHETAEDAEVSGYYIPKKARVMINAWAIGRDKNSWEDPESFKPSRFLKEGVPDFKGSNFEFIPFGSGRRSCPGMQLGLYALELSVAHLLHCFTWELPDGMKPSEMDMSDVFGLTAPRASRLVAIPSKRVVCPLF | 515 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi09g0610 | 515 | PRINTS | P450 superfamily signature | 366 | 377 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Glsi09g0610 | 515 | PRINTS | P450 superfamily signature | 452 | 463 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Glsi09g0610 | 515 | PRINTS | P450 superfamily signature | 313 | 330 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Glsi09g0610 | 515 | PRINTS | P450 superfamily signature | 443 | 452 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Glsi09g0610 | 515 | PRINTS | E-class P450 group I signature | 452 | 475 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Glsi09g0610 | 515 | PRINTS | E-class P450 group I signature | 90 | 111 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Glsi09g0610 | 515 | PRINTS | E-class P450 group I signature | 302 | 319 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Glsi09g0610 | 515 | PRINTS | E-class P450 group I signature | 405 | 429 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Glsi09g0610 | 515 | PRINTS | E-class P450 group I signature | 442 | 452 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Glsi09g0610 | 515 | PRINTS | E-class P450 group I signature | 322 | 348 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Glsi09g0610 | 515 | PRINTS | E-class P450 group I signature | 66 | 85 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Glsi09g0610 | 515 | PRINTS | E-class P450 group I signature | 181 | 199 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Glsi09g0610 | 515 | PRINTS | E-class P450 group I signature | 365 | 383 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Glsi09g0610 | 515 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 445 | 454 | IPR017972 | GO:0005506|GO:0016705 | |
| Glsi09g0610 | 515 | SUPERFAMILY | Cytochrome P450 | 39 | 509 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Glsi09g0610 | 515 | PANTHER | CYTOCHROME P450 84A1-RELATED | 10 | 514 | - | - | |
| Glsi09g0610 | 515 | CDD | CYP71-like | 68 | 502 | - | - | |
| Glsi09g0610 | 515 | Pfam | Cytochrome P450 | 39 | 498 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Glsi09g0610 | 515 | FunFam | Cytochrome P450 84A1 | 31 | 508 | - | - | |
| Glsi09g0610 | 515 | Gene3D | Cytochrome P450 | 32 | 508 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi09g0610 | Glsi-ChrGlsi09 | 4231390 | 4233324 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi09g0610 | 46 | 514 | Monolignol Biosynthesis Gene Families | AT4G36220 | 75.527 | 0.0 | 771 |