Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0608 ATGCTTTACCAAACTCACCTTCCTCTTTTCTTTCCATTTCATCCTTTTCGATTCTTCCATCCCCCTCGTCTTGCACCCACATCAAATCTCTCCTCACTTCCTCTGTTTTCTTATCTTTCTCGACTTCAGGCCGAGACAGAAATGGAGTGCGAAGCTGCGTTGAAGGCCAGTTTTAGGAAAGATATGACCTTGAAATTTAGCCCCGAAGCATTTCTAGAGGAGTTATCGGCGTTGAATGGGCAAAATGGCACCCCTTGCGACGACTTTTTTGTGGATGACCTGCTTGACTTCTCTCATGAAGACGCCCTTTTAGAAGAAGAACCAGAAGTAGAAGAAAAACGCAAAGATGTCTCTGTTTCTGTTTCCTCTCAGCAGGCGAACCAAAGCCATGATATTTATAACATTGGTACCAGTTATTCTGTCAAGGACGAGTTCGGGTGTGTGCCCTCTAGCGAACTCAGCGTTCCGGCAGATGATGTGGCAGACTTAGAGTGGTTGTCTCATTTTGTGGAGGATTCCTTTTTGGAATACTCTGCTGCTTACCCCACCGGAACTTCAATAGAGAAGCCCAAGAGCCATGCAGGGAAAGCGCTTCAACCCGGAAGCCCTGTTTCGACCCAACCCTGTTTCAAAACTCCGGTTCCAGCTAAGGCTAGAAGCAAACGAACAAGGACCGGCCTTCGAGTTTGGCCACTGGGGTCTCACTGCTTCGCGGACTCATCCTCAAGCTCCTCCTCGTCTACATCCTCTTCGTCGTCTCCGTCCAGCTCTTGGCTAATTTACACCGGCGTAACCCACAACTTCGAGCAAGTTAGTTCGGAAGCAAATTTGGCGGCGAAGAAACCGAAGAAAAAGCCAGCATCGGAGGCGGCGGGGACCGGTGCAGTGCAGACGCCACGTAGGTGCAGCCATTGCGGTGTGCAGAAGACCCCACAGTGGAGAACGGGGCCGCTCGGAGCCAAAACGCTGTGCAACGCATGTGGGGTCCGATTCAAGTCGGGTAGGCTCTTACCCGAATACAGGCCGGCATGTAGCCCGACATTCTCCAGCGAATTACACTCGAACCACCACCGTAAAGTGCTGGAGATGCGGCGGAAGAAGGAGGTAACGGGTGGAATTGAGTCCGATTTAGCCTCTCCTCCGGCCGTTCCTAGTTGTTGA 1161 0.5134 MLYQTHLPLFFPFHPFRFFHPPRLAPTSNLSSLPLFSYLSRLQAETEMECEAALKASFRKDMTLKFSPEAFLEELSALNGQNGTPCDDFFVDDLLDFSHEDALLEEEPEVEEKRKDVSVSVSSQQANQSHDIYNIGTSYSVKDEFGCVPSSELSVPADDVADLEWLSHFVEDSFLEYSAAYPTGTSIEKPKSHAGKALQPGSPVSTQPCFKTPVPAKARSKRTRTGLRVWPLGSHCFADSSSSSSSSTSSSSSPSSSWLIYTGVTHNFEQVSSEANLAAKKPKKKPASEAAGTGAVQTPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVTGGIESDLASPPAVPSC 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0608 386 MobiDBLite consensus disorder prediction 188 224 - -
Glsi09g0608 386 FunFam GATA transcription factor 293 376 - -
Glsi09g0608 386 CDD ZnF_GATA 301 349 IPR000679 GO:0006355|GO:0043565
Glsi09g0608 386 MobiDBLite consensus disorder prediction 276 296 - -
Glsi09g0608 386 ProSiteProfiles GATA-type zinc finger domain profile. 296 332 IPR000679 GO:0006355|GO:0043565
Glsi09g0608 386 Pfam GATA zinc finger 302 336 IPR000679 GO:0006355|GO:0043565
Glsi09g0608 386 SMART GATA_3 296 350 IPR000679 GO:0006355|GO:0043565
Glsi09g0608 386 Gene3D - 294 369 IPR013088 GO:0006355|GO:0008270
Glsi09g0608 386 ProSitePatterns GATA-type zinc finger domain. 302 327 IPR000679 GO:0006355|GO:0043565
Glsi09g0608 386 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 296 358 - -
Glsi09g0608 386 PANTHER GATA TRANSCRIPTION FACTOR 76 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0608 Glsi-ChrGlsi09 4215747 4217112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0608 51 385 C2C2-Gata Transcription Factor Family AT5G66320 55.263 5.59e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi09g0608 GATA 5.2e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1376 05 62779775 62781138 Glsi09g0608 09 4215747 4217112 CCT
Glsi09g0608 09 4215747 4217112 Glsi05g1376 05 62779775 62781138 ECH
Glsi09g0608 09 4215747 4217112 Glsi09g0608 09 4215747 4217112 ECH