Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0573 ATGTCATTTCTGGATCCGGAGTCTAAAGGGTTCCATTCTGATCGCCTTCCTACTCACTTAAAACATTCTGAAATTTGTCGAGCTGATTTGGTGCTATTGATCTGTCTGTTCTTTGCTTCAATTTTACAGAAAATTCATAAGAGTTTTGTGTTGGAAGGAAGATTGATATGCTGTGCAAACATGTCATTGAAAAGCATAGTTCGTGAACTAAAGGAATTGAAAGATGGAATGGGCAGCATATCAAAGCGAGTTGCAGAAGGTAAGCGAGGGCCGAGTCGAACAAAGTCGCATATTGCTCCTGATTCCCCCCTTCCTCCATTTGATCCCATTCAACAAGGGCAGTGGGCAAATCTACCTCCAGAACTGCTTTTGGACATTATCAGGAGGGTGGAAGAGAGTGAGACATCTTGGCCTGCACGGGCTGTCATTGTTTTTTGTGCTTCAGTATGTAAATCATGGAGGACCATTTCAAAGGAGATCGTTAAGACTCCTGAGCAATGTGGGAGGCTCACATTTCCTATCTCATTGAAGCAGCCTGGTCCTCGTGATTCTTCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCTACATATTTACTGTATTTGGCTCTGGTGCCATCGGAGAATGAGAGAGATAAGTTGTTATTAGCTGCCAGAAAGATAAGAAGAGCAACAGGCACAGACTTTGTTATATCTTTGGTTGCGGATGATTTTTCTCGGGCCAGCAACACATATGTTGGTAAATTGAGGTCTAATATTTTGGGAACCAAGTTCACTGTATACGACAGCCAACCACCACACAAAGCTAGTGTTCAACCTAATCATTCTAGCCGGAGATTTCACTCTAAGCAGGTATCTCCCAGAGTTCCAGCTTGTAACTATAATGTTGCTACCATTGCCTATGAGCTCAATGTTCTCCGCACGAGAGGTCCTAGGAGAATGCACTGCATTTTGAACTCCATACCTGTCTCAGCTATTCAGGAAGGGGGCAATGCACCAACTCCAACAACTTTTCCTCATATCTCTTATGAGCAATTTTCGTCCTCACCGGCACTAAAAGGAAAAGATCCAATTGCAGATTTAAAGTCTGCAATCCTGTCAGAGCCACCAGTATTGAGCCAGGGCTCGCTTGAGCCTCTGGCACTTAAAAACAAGGCTCCCAGATGGCATGAGCAGCTGCAGTGCTGGTGCCTGAACTTCAAGGGCCGTGTTACAGTGGCTTCTGTTAAGAATTTCCAGCTTGTGGCTGCTGTTGATCCATCTCATAATGTCTCTGCCGTAGAACAAGAAAAGGTAATCTTGCAATTTGGAAAGATTGGAAAAGACATATTTACCATGGACTATCGTTATCCTCTCTCTGCTTTCCAAGCCTTTGCCATCTGCTTGAGCAGCTTTGATACTAAACCTGCCTGTGAATGA 1422 0.4388 MSFLDPESKGFHSDRLPTHLKHSEICRADLVLLICLFFASILQKIHKSFVLEGRLICCANMSLKSIVRELKELKDGMGSISKRVAEGKRGPSRTKSHIAPDSPLPPFDPIQQGQWANLPPELLLDIIRRVEESETSWPARAVIVFCASVCKSWRTISKEIVKTPEQCGRLTFPISLKQPGPRDSSIQCFIRRNRETSTYLLYLALVPSENERDKLLLAARKIRRATGTDFVISLVADDFSRASNTYVGKLRSNILGTKFTVYDSQPPHKASVQPNHSSRRFHSKQVSPRVPACNYNVATIAYELNVLRTRGPRRMHCILNSIPVSAIQEGGNAPTPTTFPHISYEQFSSSPALKGKDPIADLKSAILSEPPVLSQGSLEPLALKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAVEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0573 473 FunFam Tubby-like F-box protein 172 473 - -
Glsi09g0573 473 Pfam F-box domain 115 162 IPR001810 GO:0005515
Glsi09g0573 473 ProSitePatterns Tub family signature 1. 401 414 IPR018066 -
Glsi09g0573 473 CDD F-box_AtTLP-like 115 159 - -
Glsi09g0573 473 MobiDBLite consensus disorder prediction 81 95 - -
Glsi09g0573 473 MobiDBLite consensus disorder prediction 265 281 - -
Glsi09g0573 473 SUPERFAMILY F-box domain 109 158 IPR036047 GO:0005515
Glsi09g0573 473 PANTHER TUBBY-RELATED 94 471 - -
Glsi09g0573 473 PRINTS Tubby superfamily signature 430 449 IPR000007 -
Glsi09g0573 473 PRINTS Tubby superfamily signature 294 321 IPR000007 -
Glsi09g0573 473 PRINTS Tubby superfamily signature 401 417 IPR000007 -
Glsi09g0573 473 PRINTS Tubby superfamily signature 230 246 IPR000007 -
Glsi09g0573 473 PRINTS Tubby superfamily signature 246 270 IPR000007 -
Glsi09g0573 473 PRINTS Tubby superfamily signature 383 400 IPR000007 -
Glsi09g0573 473 PRINTS Tubby superfamily signature 451 473 IPR000007 -
Glsi09g0573 473 Gene3D - 109 161 - -
Glsi09g0573 473 Gene3D Tubby Protein; Chain A 173 473 IPR025659 -
Glsi09g0573 473 ProSitePatterns Tub family signature 2. 458 473 IPR018066 -
Glsi09g0573 473 SUPERFAMILY Tubby C-terminal domain-like 164 473 IPR025659 -
Glsi09g0573 473 MobiDBLite consensus disorder prediction 265 285 - -
Glsi09g0573 473 Pfam Tub family 176 468 IPR000007 -
Glsi09g0573 473 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0573 Glsi-ChrGlsi09 3983458 3986305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0573 61 473 TUB Transcription Factor Family AT2G18280 65.217 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Glsi09g0573 Tub 3.1e-107 CL0395